Browse Element(s) Details


OsAffx.13663.1.S1_x_at

Description tigr:9629.m06126
TID=OsAffx.13663.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6210011/11hypothetical protein
LOC_Os04g0439010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62070Os.10121.1.S1_at11/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_x_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62080Os.54716.1.S1_x_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080OsAffx.2386.1.S1_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080Os.20399.1.S1_s_at10/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62090OsAffx.11692.1.S1_at8/111+36262295..36265380hypothetical protein
LOC_Os01g62090OsAffx.30618.1.S1_at1/111+36262295..36265380hypothetical protein
LOC_Os01g62100OsAffx.13663.1.S1_x_at11/111+36267089..36276320hypothetical protein
LOC_Os01g62110Os.10760.1.S1_at11/111+36279778..36280345expressed protein
LOC_Os01g62120NANA1+36291156..36291593hypothetical protein
LOC_Os01g62130Os.28023.1.S1_at11/111+36293007..36293783Zinc finger, C2H2 type family protein, expressed
LOC_Os01g62140Os.24942.4.A1_x_at5/111+36299711..36300508hypothetical protein
LOC_Os01g62140Os.24942.4.A1_at3/111+36299711..36300508hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13663.1.S1_x_at--128--4972Chr01:36274228..36274252 (25 bp)
GCATAAATCTGTTGCTGACCTTAAA
LOC_Os01g62100
OsAffx.13663.1.S1_x_at--374--2252Chr01:36274772..36274796 (25 bp)
AAATTTACCTTTGCTGTCTCTGTCA
LOC_Os01g62100
OsAffx.13663.1.S1_x_at--1155--7091Chr01:36274793..36274817 (25 bp)
GTCACTGAGCGGAGCCTTATGCACA
LOC_Os01g62100
OsAffx.13663.1.S1_x_at--1051--3672Chr01:36274855..36274918 (25 bp)
CTTTGGAAGACAGGGCCCTTCTACT
LOC_Os01g62100
OsAffx.13663.1.S1_x_at--1045--9772Chr01:36274948..36274972 (25 bp)
TAAGGATGACGCCTCTCAATCTCAT
LOC_Os01g62100
OsAffx.13663.1.S1_x_at--335--6572Chr01:36274988..36275012 (25 bp)
GATTCATCTACTTCGACTGCTGATC
LOC_Os01g62100
OsAffx.13663.1.S1_x_at--21--4752Chr01:36275006..36275030 (25 bp)
GCTGATCCAGTCGATGAACTTCCTG
LOC_Os01g62100
OsAffx.13663.1.S1_x_at--145--4032Chr01:36275060..36275167 (25 bp)
CGTCATCCTCTAGCAGCACAGAAAA
LOC_Os01g62100
OsAffx.13663.1.S1_x_at--996--52Chr01:36275169..36275193 (25 bp)
ATTGACCTTTGAAACAGCTCCATCC
LOC_Os01g62100
OsAffx.13663.1.S1_x_at--752--10052Chr01:36275864..36275887 (24 bp)
TAGTTCTTCTCGCACTGATGACCAA
LOC_Os01g62100
OsAffx.13663.1.S1_x_at--341--2872Chr01:36276258..36276281 (24 bp)
AAGTGTTGATCCAGGCTCTACAGGC
LOC_Os01g62100
Target Sequence 
GCATAAATCTGTTGCTGACCTTAAAAAGATTGATCCATGGGAAGCTGCGGGCAGATCAGACAATATTCCTAAAGAAATTG
CTGCTGTTGTTTCACAGAAATTTACCTTTGCTGTCTCTGTCACTGAGCGGAGCCTTATGCACAGGAATATATCTTTTCAA
GTTAATGGAATCGAGACTTTCTTTGGAAGACAGGGCCCTTCTACTCCTTTGGCTCTTGCTGCTTCTGGTATGGATAAGGA
TGACGCCTCTCAATCTCATGAGTCAACCCCGGTCGATTCATCTACTTCGACTGCTGATCCAGTCGATGAACTTCCTGGTG
ACAGCAAGAAGCGGAAATCCATTGTCCGTCATCCTCTAGCAGCACAGAAAAAATTGACCTTTGAAACAGCTCCATCCAGC
AAAGAAAACACCAGCCCGGTTGACCCTCCTACTAGTTCTTCTCGCACTGATGACCAAGCTGCTGATAAGCAACATGTTGT
GCCTCATGAGGTCAAAGATATCCTACCAACTGAAGCCAAAAAGAAAAGTGTTGATCCAGGCTCTACAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13663.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis