Browse Element(s) Details


Os.28023.1.S1_at

Description gb:AY266289.1
DB_XREF= gi:30420733
GEN=ZFP19
TID=Os.28023.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28023 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) zinc finger transcription factor ZFP19 (ZFP19) mRNA, complete cds.
PROD=zinc finger transcription factor ZFP19
FL= gb:AY266289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6213011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62100OsAffx.13663.1.S1_x_at11/111+36267089..36276320hypothetical protein
LOC_Os01g62110Os.10760.1.S1_at11/111+36279778..36280345expressed protein
LOC_Os01g62120NANA1+36291156..36291593hypothetical protein
LOC_Os01g62130Os.28023.1.S1_at11/111+36293007..36293783Zinc finger, C2H2 type family protein, expressed
LOC_Os01g62140Os.24942.4.A1_x_at5/111+36299711..36300508hypothetical protein
LOC_Os01g62140Os.24942.4.A1_at3/111+36299711..36300508hypothetical protein
LOC_Os01g62150Os.24942.1.S1_at11/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62150OsAffx.23889.1.S1_s_at10/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62160Os.33927.1.S1_at11/111+36311107..36314405expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28023.1.S1_at--977--4251Chr01:36293326..36293350 (25 bp)
CCGGCGAAGCCGAGGGTGCACGAGT
LOC_Os01g62130
Os.28023.1.S1_at--815--4651Chr01:36293292..36293316 (25 bp)
GCGGGCTCGAGTTCCCCATCGGGCA
LOC_Os01g62130
Os.28023.1.S1_at--412--4671Chr01:36293145..36293169 (25 bp)
GCGGTGTCTGCCTGGACTTGAACCT
LOC_Os01g62130
Os.28023.1.S1_at--587--7171Chr01:36293140..36293164 (25 bp)
GTCTGCCTGGACTTGAACCTGACGC
LOC_Os01g62130
Os.28023.1.S1_at--149--1831Chr01:36293119..36293143 (25 bp)
ACGCCGTCGGAGAACCGCGCAAAGT
LOC_Os01g62130
Os.28023.1.S1_at--853--5431Chr01:36293108..36293132 (25 bp)
GAACCGCGCAAAGTGCCGGAACGTG
LOC_Os01g62130
Os.28023.1.S1_at--272--1091Chr01:36293061..36293085 (25 bp)
AGGGCGTACACAAGGCGCTCGCCAT
LOC_Os01g62130
Os.28023.1.S1_at--37--3811Chr01:36293044..36293068 (25 bp)
CTCGCCATGTTGGATTGTTTCCTTT
LOC_Os01g62130
Os.28023.1.S1_at--288--7911Chr01:36293033..36293057 (25 bp)
GGATTGTTTCCTTTGAGCCGTTCAA
LOC_Os01g62130
Os.28023.1.S1_at--101--8571Chr01:36293029..36293053 (25 bp)
TGTTTCCTTTGAGCCGTTCAAACTG
LOC_Os01g62130
Os.28023.1.S1_at--250--3291Chr01:36293011..36293035 (25 bp)
CAAACTGCACATATTATTGCATGAT
LOC_Os01g62130
Target Sequence 
CCGGCGAAGCCGAGGGTGCACGAGTGCCCCGTCTGCGGGCTCGAGTTCCCCATCGGGCAGGCGCTCGGCGGGCACATGCG
TCGGCACCGCGCGGAGGCCGAGGCGGCGGCGACAACGACGACGACGACGACGAAGAACGGCGACGTAGGCAAGGCGGCGG
CCGTGAAGGCCTGCGACGGCGGCGGTGTCTGCCTGGACTTGAACCTGACGCCGTCGGAGAACCGCGCAAAGTGCCGGAAC
GTGGTGGGTCTCGGCGCCGGCGGGCAGGGCGTACACAAGGCGCTCGCCATGTTGGATTGTTTCCTTTGAGCCGTTCAAAC
TGCACATATTATTGCATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis