Browse Element(s) Details


Os.24942.1.S1_at

Description gb:AK066366.1
DB_XREF= gi:32976384
TID=Os.24942.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1096D03.32 (B1096D03.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067M01, full insert sequence.
FL= gb:AK066366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6215011/11Clathrin adaptor complex small chain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62120NANA1+36291156..36291593hypothetical protein
LOC_Os01g62130Os.28023.1.S1_at11/111+36293007..36293783Zinc finger, C2H2 type family protein, expressed
LOC_Os01g62140Os.24942.4.A1_x_at5/111+36299711..36300508hypothetical protein
LOC_Os01g62140Os.24942.4.A1_at3/111+36299711..36300508hypothetical protein
LOC_Os01g62150Os.24942.1.S1_at11/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62150OsAffx.23889.1.S1_s_at10/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62160Os.33927.1.S1_at11/111+36311107..36314405expressed protein
LOC_Os01g62170OsAffx.21761.1.S1_x_at11/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.4.S1_x_at10/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.21761.1.S1_at9/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_x_at6/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_at5/111+36320830..36322782hypothetical protein
LOC_Os01g62180NANA1+36322908..36323828hypothetical protein
LOC_Os01g62190Os.10411.1.S1_at11/111+36328091..36328950Zinc finger, C2H2 type family protein, expressed
LOC_Os01g62200Os.38316.1.S1_at11/111+36329408..36331950expressed protein
LOC_Os01g62200Os.38316.1.S1_s_at10/111+36329408..36331950expressed protein
LOC_Os01g62200Os.27407.1.A1_at6/111+36329408..36331950expressed protein
LOC_Os01g62210Os.47966.1.S1_at10/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62210OsAffx.21760.1.S1_at1/111+36334251..36336745ribosomal protein L17 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0030125cellular_componentclathrin vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24942.1.S1_at--1138--3571Chr01:36310327..36310351 (25 bp)
CATTTGCACAAATGCTATGCTAATG
LOC_Os01g62150
Os.24942.1.S1_at--246--9071Chr01:36310339..36310363 (25 bp)
TGCTATGCTAATGTAGAACATCTAC
LOC_Os01g62150
Os.24942.1.S1_at--304--5491Chr01:36310354..36310378 (25 bp)
GAACATCTACAATCAGGCATATTAA
LOC_Os01g62150
Os.24942.1.S1_at--459--8232Chr05:17197226..17197440 (25 bp)
GGCATATTAAACATTTGACAACCTG
NONE
Os.24942.1.S1_at--369--2511Chr01:36310378..36310402 (25 bp)
AACATTTGACAACCTGTAGTTATTG
LOC_Os01g62150
Os.24942.1.S1_at--646--3251Chr01:36310387..36310411 (25 bp)
CAACCTGTAGTTATTGATTGACGCT
LOC_Os01g62150
Os.24942.1.S1_at--547--6591Chr01:36310402..36310426 (25 bp)
GATTGACGCTACTAATTGTTTCTTC
LOC_Os01g62150
Os.24942.1.S1_at--797--6831Chr01:36310419..36310443 (25 bp)
GTTTCTTCACAATCGGGTTTTGCAG
LOC_Os01g62150
Os.24942.1.S1_at--1008--3971Chr01:36310432..36310456 (25 bp)
CGGGTTTTGCAGGATTGTTCTGGAA
LOC_Os01g62150
Os.24942.1.S1_at--900--2011Chr01:36311014..36311038 (25 bp)
ACTACATACATTTACTTCGGCCTGG
LOC_Os01g62150
Os.24942.1.S1_at--764--311Chr01:36311019..36311043 (25 bp)
ATACATTTACTTCGGCCTGGTTTGG
LOC_Os01g62150
Target Sequence 
CATTTGCACAAATGCTATGCTAATGTAGAACATCTACAATCAGGCATATTAAACATTTGACAACCTGTAGTTATTGATTG
ACGCTACTAATTGTTTCTTCACAATCGGGTTTTGCAGGATTGTTCTGGAAACAGATGCAAAGGCGATTCTTGAAAAGGTA
TCAGGTCATGGATTGGAAGGATCCGGGTCTCTCACTGAGCAGAAGTTAAGCAGTGCCCTAGCAACGGCAAGAGAACACTT
TGCGAGATCTATTTTCAGCTGATGGCGTGTCATCCTTCAGGTTGACGATGAGCAAGCCTCAGATAGTGTCTCTGTTAGCA
GATCAGTACTCCCAGTTTGCAATGTCCTTTGAACATTTGCCACGGGTTAGTGGTAGGTGCAGCTTAACTGGCGATCATTG
TCATCCTAAGAAGGTTGTGGTCGGCACACTTGTTACTCTTGTGGTTTCATGTCGATCTTGGCTGTAATCGAGCACAGTAA
CCATGTAGCAACATGTTTCTGCTCAAAGACGAGCCAGTTTCCAAATTGTCTTCAGTATACAGCCGCCATGTTTTGACGTA
GTACTACATACATTTACTTCGGCCTGGTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis