Browse Element(s) Details


OsAffx.21761.1.S1_x_at

Description gb:NM_190517.1
DB_XREF= gi:34908117
GEN=P0031D11.16
TID=OsAffx.21761.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0031D11.16 (P0031D11.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6217011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62140Os.24942.4.A1_x_at5/111+36299711..36300508hypothetical protein
LOC_Os01g62140Os.24942.4.A1_at3/111+36299711..36300508hypothetical protein
LOC_Os01g62150Os.24942.1.S1_at11/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62150OsAffx.23889.1.S1_s_at10/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62160Os.33927.1.S1_at11/111+36311107..36314405expressed protein
LOC_Os01g62170OsAffx.21761.1.S1_x_at11/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.4.S1_x_at10/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.21761.1.S1_at9/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_x_at6/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_at5/111+36320830..36322782hypothetical protein
LOC_Os01g62180NANA1+36322908..36323828hypothetical protein
LOC_Os01g62190Os.10411.1.S1_at11/111+36328091..36328950Zinc finger, C2H2 type family protein, expressed
LOC_Os01g62200Os.38316.1.S1_at11/111+36329408..36331950expressed protein
LOC_Os01g62200Os.38316.1.S1_s_at10/111+36329408..36331950expressed protein
LOC_Os01g62200Os.27407.1.A1_at6/111+36329408..36331950expressed protein
LOC_Os01g62210Os.47966.1.S1_at10/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62210OsAffx.21760.1.S1_at1/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62220OsAffx.11696.1.S1_at11/111+36338499..36339869pentatricopeptide, putative
LOC_Os01g62230Os.19784.1.S1_at10/111+36340890..36341546Histone H2B, putative, expressed
LOC_Os01g62244Os.12603.1.S1_at11/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.51168.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.52300.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21761.1.S1_x_at--385--491Chr01:36320862..36320969 (25 bp)
ATCGGATGGTGACAGTCCGATTTTC
LOC_Os01g62170
OsAffx.21761.1.S1_x_at--880--9391Chr01:36320863..36320970 (25 bp)
TCGGATGGTGACAGTCCGATTTTCG
LOC_Os01g62170
OsAffx.21761.1.S1_x_at--629--3951Chr01:36320864..36320971 (25 bp)
CGGATGGTGACAGTCCGATTTTCGT
LOC_Os01g62170
OsAffx.21761.1.S1_x_at--504--1771Chr01:36321017..36321041 (25 bp)
ACCGGGCAAACAAAGTCTCTTGGCG
LOC_Os01g62170
OsAffx.21761.1.S1_x_at--502--4231Chr01:36321018..36321042 (25 bp)
CCGGGCAAACAAAGTCTCTTGGCGG
LOC_Os01g62170
OsAffx.21761.1.S1_x_at--64--3991Chr01:36321019..36321043 (25 bp)
CGGGCAAACAAAGTCTCTTGGCGGT
LOC_Os01g62170
OsAffx.21761.1.S1_x_at--564--7591Chr01:36321020..36321044 (25 bp)
GGGCAAACAAAGTCTCTTGGCGGTT
LOC_Os01g62170
OsAffx.21761.1.S1_x_at--281--8151Chr01:36321021..36321045 (25 bp)
GGCAAACAAAGTCTCTTGGCGGTTT
LOC_Os01g62170
OsAffx.21761.1.S1_x_at--543--4811Chr01:36321022..36321046 (25 bp)
GCAAACAAAGTCTCTTGGCGGTTTT
LOC_Os01g62170
OsAffx.21761.1.S1_x_at--626--8471Chr01:36321067..36321091 (25 bp)
TGGCGCCTATGTGGCTTAGTTTGAC
LOC_Os01g62170
OsAffx.21761.1.S1_x_at--569--8391Chr01:36321068..36321092 (25 bp)
GGCGCCTATGTGGCTTAGTTTGACT
LOC_Os01g62170
Target Sequence 
ATCGGATGGTGACAGTCCGATTTTCGTCCCTTACCGTAAAACCGGGTACGACCCGTCCCCCAACTTACGAAAACCGGGCA
AACAAAGTCTCTTGGCGGTTTTAAAGGCGGTTTTGGCTGATGTGGCGCCTATGTGGCTTAGTTTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21761.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis