Browse Element(s) Details


Os.19784.1.S1_at

Description gb:BE039851
DB_XREF= gi:8334867
DB_XREF=OC09A11
TID=Os.19784.1
CNT=17
FEA=mRNA
TIER=Stack
STK=7
UG=Os.19784 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative histone H2B (P0031D11.23), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6223010/11Histone H2B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62170OsAffx.21761.1.S1_x_at11/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.4.S1_x_at10/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.21761.1.S1_at9/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_x_at6/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_at5/111+36320830..36322782hypothetical protein
LOC_Os01g62180NANA1+36322908..36323828hypothetical protein
LOC_Os01g62190Os.10411.1.S1_at11/111+36328091..36328950Zinc finger, C2H2 type family protein, expressed
LOC_Os01g62200Os.38316.1.S1_at11/111+36329408..36331950expressed protein
LOC_Os01g62200Os.38316.1.S1_s_at10/111+36329408..36331950expressed protein
LOC_Os01g62200Os.27407.1.A1_at6/111+36329408..36331950expressed protein
LOC_Os01g62210Os.47966.1.S1_at10/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62210OsAffx.21760.1.S1_at1/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62220OsAffx.11696.1.S1_at11/111+36338499..36339869pentatricopeptide, putative
LOC_Os01g62230Os.19784.1.S1_at10/111+36340890..36341546Histone H2B, putative, expressed
LOC_Os01g62244Os.12603.1.S1_at11/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.51168.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.52300.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62260Os.28139.1.S1_at10/111+36356643..36357818Osmotin-like protein precursor, putative, expressed
LOC_Os01g62280OsAffx.21758.1.S1_at9/111+36365678..36366068hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19784.1.S1_at--641--7891Chr01:36341440..36341464 (25 bp)
GGTTCATCTCCAGCGAATTCCCGAT
LOC_Os01g62230
Os.19784.1.S1_at--704--5871Chr01:36341277..36341301 (25 bp)
GAGCGTCGAAACTTATAAGATCTAC
LOC_Os01g62230
Os.19784.1.S1_at--253--9711Chr01:36341239..36341263 (25 bp)
TCAAGCAGGTGCATCCCGATATCGG
LOC_Os01g62230
Os.19784.1.S1_at--366--7111Chr01:36341021..36341045 (25 bp)
GTCACCAAGTTCACGTCGTCTTAAG
LOC_Os01g62230
Os.19784.1.S1_at--142--6751Chr01:36340985..36341009 (25 bp)
GTTCATGTTCGTTGGATGTTTATCT
LOC_Os01g62230
Os.19784.1.S1_at--812--7991Chr01:36340972..36340996 (25 bp)
GGATGTTTATCTGTTCTGATGTTTA
LOC_Os01g62230
Os.19784.1.S1_at--166--3871Chr01:36340957..36340981 (25 bp)
CTGATGTTTATTTAGAGCGCTCTTA
LOC_Os01g62230
Os.19784.1.S1_at--478--10331Chr01:36340947..36340971 (25 bp)
TTTAGAGCGCTCTTAGATTTCCCAC
LOC_Os01g62230
Os.19784.1.S1_at--1160--4571Chr01:36340941..36340965 (25 bp)
GCGCTCTTAGATTTCCCACATGGAA
LOC_Os01g62230
Os.19784.1.S1_at--174--6951Chr01:36340912..36340936 (25 bp)
GTAGTATCGGTGAAATTCGCTATAA
LOC_Os01g62230
Os.19784.1.S1_at--133--9851Chr01:36340890..36340914 (25 bp)
TAAATGAATCGCTGATCTTATCACA
NONE
Target Sequence 
GGTTCATCTCCAGCGAATTCCCGATGGCGCCCAAGGCGGAGAAGAAGCCCGCGGAGAAGAAGCCGGTGGAGGAGAAGGCG
GAGAAGAAGCCCAAGGCCGAGAAGCGGGTGCCGGGCGCCAAGGAGGGCGGCGGCGAGAAGAAGGGGAAGAAGAAGGCCAA
GAAGAGCGTCGAAACTTATAAGATCTACATTTTCAAGGTCCTCAAGCAGGTGCATCCCGATATCGGGATNTCGTCCAAGG
CCATGTCGATCATGAACTCGTTCATCAACGATATCTTCGAGAAGCTCGCCCAGGAGGCCGCCCGTCTCGCCCGCTACAAC
AAGAAGCCGACCATCACCTCCCGCGAGATCCAGACCTCGGTGCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGT
CTCTGAGGGCACCAAGGCCGTCACCAAGTTCACGTCGTCTTAAGACGCGTGNTCTGTTCATGTTCGTTGGATGTTTATCT
GTTCTGATGTTTATTTAGAGCGCTCTTAGATTTCCCACATGGAACAATGTAGTATCGGTGAAATTCGCTATAAATGAATC
GCTGATCTTATCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis