Browse Element(s) Details


Os.54716.1.S1_x_at

Description gb:AK106580.1
DB_XREF= gi:32991789
TID=Os.54716.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54716 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-D10, full insert sequence.
FL= gb:AK106580.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6208011/11Protein kinase AFC1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62020Os.9835.2.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020Os.9835.1.S1_a_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020OsAffx.11691.1.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62030OsAffx.9560.1.S1_at11/111+36227584..36228075disease resistance-responsive family protein, putative
LOC_Os01g62040Os.38033.3.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.3.S1_x_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.1.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.2.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62050OsAffx.21763.2.S1_s_at11/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.2.S1_at10/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.1.S1_at2/111+36235334..36235956hypothetical protein
LOC_Os01g62060Os.30998.1.S1_at11/111+36238933..36240170uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os01g62070Os.10121.1.S1_at11/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_x_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62080Os.54716.1.S1_x_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080OsAffx.2386.1.S1_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080Os.20399.1.S1_s_at10/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62090OsAffx.11692.1.S1_at8/111+36262295..36265380hypothetical protein
LOC_Os01g62090OsAffx.30618.1.S1_at1/111+36262295..36265380hypothetical protein
LOC_Os01g62100OsAffx.13663.1.S1_x_at11/111+36267089..36276320hypothetical protein
LOC_Os01g62110Os.10760.1.S1_at11/111+36279778..36280345expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006397biological_processmRNA processing
GO:0045449biological_processregulation of transcription
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54716.1.S1_x_at--306--3131Chr01:36251209..36251233 (25 bp)
AATTAGTCCGGCTTGTTTTGTTGAT
LOC_Os01g62080
Os.54716.1.S1_x_at--19--11Chr01:36251136..36251160 (25 bp)
GGTAGTTTAGGCTCGTTTTGGACAT
LOC_Os01g62080
Os.54716.1.S1_x_at--49--1371Chr01:36251078..36251102 (25 bp)
AGAGCTGCTGCTTCCTACTGTGAAT
LOC_Os01g62080
Os.54716.1.S1_x_at--1073--9891Chr01:36251030..36251054 (25 bp)
TACTCATTGGGCTACGTGACGTCAG
LOC_Os01g62080
Os.54716.1.S1_x_at--990--9931Chr01:36251018..36251042 (25 bp)
TACGTGACGTCAGCCCAAAGATCGC
LOC_Os01g62080
Os.54716.1.S1_x_at--174--1291Chr01:36251000..36251024 (25 bp)
AGATCGCCTCCAAAGCTGTAGCAGC
LOC_Os01g62080
Os.54716.1.S1_x_at--1018--4651Chr01:36250977..36251001 (25 bp)
GCGGGTCAATTGTACAAGAGCCTGT
LOC_Os01g62080
Os.54716.1.S1_x_at--1045--5851Chr01:36250960..36250984 (25 bp)
GAGCCTGTAACTCTGTAAGGTATGA
LOC_Os01g62080
Os.54716.1.S1_x_at--56--2611Chr01:36250909..36250933 (25 bp)
AACGCTTCCATCGTCATGTTACATG
LOC_Os01g62080
Os.54716.1.S1_x_at--521--3511Chr01:36250895..36250919 (25 bp)
CATGTTACATGAGATCGCGTTCGAA
LOC_Os01g62080
Os.54716.1.S1_x_at--695--1151Chr01:36250819..36250843 (25 bp)
AGTCGTATTTGCTTCGATCATCATA
LOC_Os01g62080
Target Sequence 
AATTAGTCCGGCTTGTTTTGTTGATTAAAGATGAAATCATTCTATAGGCAAGATAGACTAACCCCAGANTGCTGGTAGTT
TAGGCTCGTTTTGGACATGCGAAAGATTTTACTCATCGAAGGTGGATTTGGAGAGCTGCTGCTTCCTACTGTGAATGGAT
GAGNAGCTGGTAAATNTTTTACTCATTGGGCTACGTGACGTCAGCCCAAAGATCGCCTCCAAAGCTGTAGCAGCGGGTCA
ATTGTACAAGAGCCTGTAACTCTGTAAGGTATGATNTACTAACCCTTCGGAACGGGCGCCAACGCTTCCATCGTCATGTT
ACATGAGATCGCGTTCGAAGACGGCGAGCAGCAGGNTTTGATCACAGGTTTCGAACCTGGCATTNCTCGTATAGTCGTAT
TTGCTTCGATCATCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54716.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis