Browse Element(s) Details


Os.30998.1.S1_at

Description gb:AK108007.1
DB_XREF= gi:32993216
TID=Os.30998.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.30998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0031D11.2 (P0031D11.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-G12, full insert sequence.
FL= gb:AK108007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6206011/11uncharacterized plant-specific domain TIGR01589 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61990Os.16933.1.S1_at10/111+36211621..36215258ankyrin repeat family protein, putative, expressed
LOC_Os01g62000OsAffx.11689.1.S1_s_at11/111+36216652..36218214Pectate lyase family protein
LOC_Os01g62010Os.36919.2.S1_s_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_x_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62020Os.9835.2.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020Os.9835.1.S1_a_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020OsAffx.11691.1.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62030OsAffx.9560.1.S1_at11/111+36227584..36228075disease resistance-responsive family protein, putative
LOC_Os01g62040Os.38033.3.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.3.S1_x_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.1.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.2.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62050OsAffx.21763.2.S1_s_at11/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.2.S1_at10/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.1.S1_at2/111+36235334..36235956hypothetical protein
LOC_Os01g62060Os.30998.1.S1_at11/111+36238933..36240170uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os01g62070Os.10121.1.S1_at11/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_x_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62080Os.54716.1.S1_x_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080OsAffx.2386.1.S1_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080Os.20399.1.S1_s_at10/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62090OsAffx.11692.1.S1_at8/111+36262295..36265380hypothetical protein
LOC_Os01g62090OsAffx.30618.1.S1_at1/111+36262295..36265380hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30998.1.S1_at--7--4471Chr01:36239166..36239189 (24 bp)
GCCGGCTTCGTACATCAGATTGGTG
LOC_Os01g62060
Os.30998.1.S1_at--274--6611Chr01:36239320..36239340 (21 bp)
GATTGGTGCAGCATCTGATCGAGAA
LOC_Os01g62060
Os.30998.1.S1_at--514--5331Chr01:36239338..36239362 (25 bp)
GAAGTGCATCTGCTACAACATGAAC
LOC_Os01g62060
Os.30998.1.S1_at--245--8071Chr01:36239386..36239410 (25 bp)
GGAGAAGCACGCCAACATCAAGCCC
LOC_Os01g62060
Os.30998.1.S1_at--1123--5391Chr01:36239873..36239897 (25 bp)
GAAGCTGCTGGTTCCAAGAGATCAG
LOC_Os01g62060
Os.30998.1.S1_at--774--9051Chr01:36239916..36239940 (25 bp)
TGCATGCATGGCACCCACGAGAGAG
LOC_Os01g62060
Os.30998.1.S1_at--1033--991Chr01:36239958..36239982 (25 bp)
AGGATATCCATCAAGTCGTAGTACC
LOC_Os01g62060
Os.30998.1.S1_at--510--1171Chr01:36239977..36240001 (25 bp)
AGTACCTCGTACTGTCTTACATCTA
LOC_Os01g62060
Os.30998.1.S1_at--256--7151Chr01:36239990..36240014 (25 bp)
GTCTTACATCTAGCTGTTCATAGTA
LOC_Os01g62060
Os.30998.1.S1_at--512--9791Chr01:36240071..36240095 (25 bp)
TAAGATTCGGATTCGCAGCTAGCCA
LOC_Os01g62060
Os.30998.1.S1_at--474--9991Chr01:36240090..36240114 (25 bp)
TAGCCATCGTCTAGTTCAGCCGGTG
LOC_Os01g62060
Target Sequence 
GCCGGCTTCGTACATCAGATTGGTGCAGCATCTGATCGAGAAGTGCATCTGCTACAACATGAACAAGGAGGAATGCATGG
AGACGCTGGAGAAGCACGCCAACATCAAGCCCGTCATCACCTCCACCGTGTGGAAGGAGCTTGAGAAGGAGAACAGCGAG
TTCTTCGCCACGTACAAGAAGGGCCAAGGAGAGGAACCAGCGGAGAGCAAGAGCAGTAGTTCTTCACAGGAAGCTGCTGG
TTCCAAGAGATCAGGCGGAGACGACGACTAGGTGCATGCATGGCACCCACGAGAGAGGGGGCTACTTGTACAGTAGGATA
TCCATCAAGTCGTAGTACCTCGTACTGTCTTACATCTAGCTGTTCATAGTACATAGCGTATAGTAGTAATGTAGCCGTTA
TTATGTACGTTTTGCCCCGAAAATAATTAAGATTCGGATTCGCAGCTAGCCATCGTCTAGTTCAGCCGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis