Browse Element(s) Details


Os.6795.1.S1_at

Description gb:AK064231.1
DB_XREF= gi:32974249
TID=Os.6795.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6795 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0506B12.25 (P0506B12.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-H06, full insert sequence.
FL= gb:AK064231.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6198011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61940Os.35425.1.S1_at11/111+36188116..36190751stigma/style ABC transporter, putative, expressed
LOC_Os01g61940Os.49930.1.S2_x_at1/111+36188116..36190751stigma/style ABC transporter, putative, expressed
LOC_Os01g61950OsAffx.21764.1.S1_at11/111+36193638..36194192hypothetical protein
LOC_Os01g61960OsAffx.23888.1.S1_at11/111+36195770..36196597hypothetical protein
LOC_Os01g61970Os.6681.1.S1_at10/111+36197920..36200047Lung seven transmembrane receptor family protein, expressed
LOC_Os01g61980Os.6795.1.S1_at11/111+36207873..36209261expressed protein
LOC_Os01g61990Os.16933.1.S1_at10/111+36211621..36215258ankyrin repeat family protein, putative, expressed
LOC_Os01g62000OsAffx.11689.1.S1_s_at11/111+36216652..36218214Pectate lyase family protein
LOC_Os01g62010Os.36919.2.S1_s_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_x_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62020Os.9835.2.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020Os.9835.1.S1_a_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020OsAffx.11691.1.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62030OsAffx.9560.1.S1_at11/111+36227584..36228075disease resistance-responsive family protein, putative
LOC_Os01g62040Os.38033.3.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.3.S1_x_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.1.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.2.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6795.1.S1_at--858--7431Chr01:36208663..36208687 (25 bp)
GTGTCACACTTGGAGGGAGGCTTAA
LOC_Os01g61980
Os.6795.1.S1_at--645--3811Chr01:36208718..36208742 (25 bp)
CTCCAGCGTCATTATTCGATACTCA
LOC_Os01g61980
Os.6795.1.S1_at--834--411Chr01:36208769..36208793 (25 bp)
ATCATCGTCATGCTCTTCATCAAAT
LOC_Os01g61980
Os.6795.1.S1_at--377--331Chr01:36208806..36208830 (25 bp)
ATACTAAGCTCCACTGACTCTGGTG
LOC_Os01g61980
Os.6795.1.S1_at--261--2151Chr01:36208916..36208940 (25 bp)
ACAGCAACTGGCCTCGGTGAGAAAG
LOC_Os01g61980
Os.6795.1.S1_at--63--5171Chr01:36208944..36208968 (25 bp)
GCAAGCGATGCAGGTTTCCGTTTCA
LOC_Os01g61980
Os.6795.1.S1_at--71--10671Chr01:36208959..36208983 (25 bp)
TTCCGTTTCATGTCATCATCAGCGT
LOC_Os01g61980
Os.6795.1.S1_at--880--4831Chr01:36209072..36209096 (25 bp)
GCTAATTCTGTACACTTTTGATCTT
LOC_Os01g61980
Os.6795.1.S1_at--69--6431Chr01:36209091..36209115 (25 bp)
GATCTTCAGATACCTGCAGACATGA
LOC_Os01g61980
Os.6795.1.S1_at--1111--7051Chr01:36209214..36209238 (25 bp)
GTAAGCACTTGGAATGACTGTCTAA
LOC_Os01g61980
Os.6795.1.S1_at--749--3091Chr01:36209237..36209261 (25 bp)
AATACCAGAGTGCAGATTTCCCATC
LOC_Os01g61980
Target Sequence 
GTGTCACACTTGGAGGGAGGCTTAAAGAAGATGAGTGCGGCCACAGGAGGTCCTTCTCCAGCGTCATTATTCGATACTCA
TCATCAAACAAGACATCCTCAGCGTCATCATCGTCATGCTCTTCATCAAATTCATCCTCCTCCATACTAAGCTCCACTGA
CTCTGGTGTGGGGCCAGTGCTCAGGAGGAGCAGCAGTGCAAGCTCAGAGATGGACAATCCAATCCAGGGAGCAATAGCAT
ACTGCAAAAGGTCACAGCAACTGGCCTCGGTGAGAAAGAGTGCAAGCGATGCAGGTTTCCGTTTCATGTCATCATCAGCG
TCAAGGATAGCTGCAGAGTCTGAAGATCCAGATGATATAATTGAGATTTGCGGACGATGAAGTNGTTTATGTACAAATTT
AAACACTTTTGCTAATTCTGTACACTTTTGATCTTCAGATACCTGCAGACATGATCTTATAATGTCCTTCAGAAAAATTC
AAGTAGCTTGTGTAATTTGTGTAAGAACAAATAGTTTCAAATTTCTAATTCTAATCTTTAACACCAAATAGTGTAAGCAC
TTGGAATGACTGTCTAATACCAGAGTGCAGATTTCCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis