Browse Element(s) Details


Os.35425.1.S1_at

Description gb:AK067556.1
DB_XREF= gi:32977574
TID=Os.35425.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35425 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ABC transporter-like protein (P0506B12.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111O15, full insert sequence.
FL= gb:AK067556.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6194011/11stigma/style ABC transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61920NANA1+36167388..36168113Histone H4, putative, expressed
LOC_Os01g61930Os.35165.1.S1_at11/111+36171524..36181814SAC3/GANP family protein, expressed
LOC_Os01g61930Os.8716.1.S1_at11/111+36171524..36181814SAC3/GANP family protein, expressed
LOC_Os01g61940Os.35425.1.S1_at11/111+36188116..36190751stigma/style ABC transporter, putative, expressed
LOC_Os01g61940Os.49930.1.S2_x_at1/111+36188116..36190751stigma/style ABC transporter, putative, expressed
LOC_Os01g61950OsAffx.21764.1.S1_at11/111+36193638..36194192hypothetical protein
LOC_Os01g61960OsAffx.23888.1.S1_at11/111+36195770..36196597hypothetical protein
LOC_Os01g61970Os.6681.1.S1_at10/111+36197920..36200047Lung seven transmembrane receptor family protein, expressed
LOC_Os01g61980Os.6795.1.S1_at11/111+36207873..36209261expressed protein
LOC_Os01g61990Os.16933.1.S1_at10/111+36211621..36215258ankyrin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35425.1.S1_at--252--4251Chr01:36190207..36190231 (25 bp)
CCGTGCTGCCGGACACGGTGAAGAC
LOC_Os01g61940
Os.35425.1.S1_at--483--2811Chr01:36190269..36190293 (25 bp)
AAGATCGGCCCCAACACCTGCGTGA
LOC_Os01g61940
Os.35425.1.S1_at--29--2491Chr01:36190281..36190305 (25 bp)
AACACCTGCGTGATGACCGGGCACA
LOC_Os01g61940
Os.35425.1.S1_at--611--8931Chr01:36190294..36190318 (25 bp)
TGACCGGGCACAACGTGCTCCGGGA
LOC_Os01g61940
Os.35425.1.S1_at--564--9091Chr01:36190390..36190414 (25 bp)
TGCTCTTCTACTTCAGCCTCGTGCT
LOC_Os01g61940
Os.35425.1.S1_at--841--9371Chr01:36190440..36190464 (25 bp)
TCGAGCCGTACGGACGAGGTTGCAC
LOC_Os01g61940
Os.35425.1.S1_at--699--151Chr01:36190567..36190591 (25 bp)
ATTTATGCAATTGTTAAGGCGGATA
LOC_Os01g61940
Os.35425.1.S1_at--116--6271Chr01:36190593..36190617 (25 bp)
GATGTGATTTCAATTTGGACCCCTT
LOC_Os01g61940
Os.35425.1.S1_at--427--10791Chr01:36190619..36190643 (25 bp)
TTGTTTCCTGTGATTTGTAGCTAAA
LOC_Os01g61940
Os.35425.1.S1_at--321--8491Chr01:36190648..36190672 (25 bp)
TGGCTTATAGTCCACTACACTTTTT
LOC_Os01g61940
Os.35425.1.S1_at--262--10391Chr01:36190681..36190705 (25 bp)
TTTTCTCTTTGTAGTCGCTGTGTTA
LOC_Os01g61940
Target Sequence 
CCGTGCTGCCGGACACGGTGAAGACGAGGGTGCTGGCGTCCATCGGCACGGCGCTCGGCGTCAAGATCGGCCCCAACACC
TGCGTGATGACCGGGCACAACGTGCTCCGGGAGGCGGCGGTGACGCAGCTCGGCAAGTGGGAGTGCCTCCTCGTCACGGC
GGCGTGGGGCTTCTTCTTCCGGCTGCTCTTCTACTTCAGCCTCGTGCTCGGCAGCAAGAACAAGAGGAGGTGATCGAGCC
GTACGGACGAGGTTGCACGCGCGCGCGCGCATTTGCGCACGCGTTTGAACGTCCGGGGGCATTAAACGCTTGGGGAGAAA
TAGAGAGAAAATGATGGCCTAGTTAATTTGAAGCTGTTTAATTTATGCAATTGTTAAGGCGGATATGATGTGATTTCAAT
TTGGACCCCTTTTTGTTTCCTGTGATTTGTAGCTAAATAAGTGGCTTATAGTCCACTACACTTTTTTTTCTTCTTTTTCT
CTTTGTAGTCGCTGTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis