Browse Element(s) Details


Os.6681.1.S1_at

Description gb:AK066629.1
DB_XREF= gi:32976647
TID=Os.6681.1
CNT=38
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6681 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0506B12.23 (P0506B12.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071A10, full insert sequence.
FL= gb:AK061720.1 gb:AK106145.1 gb:AK098958.1 gb:AK119783.1 gb:AK066629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6197010/11Lung seven transmembrane receptor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61930Os.35165.1.S1_at11/111+36171524..36181814SAC3/GANP family protein, expressed
LOC_Os01g61930Os.8716.1.S1_at11/111+36171524..36181814SAC3/GANP family protein, expressed
LOC_Os01g61940Os.35425.1.S1_at11/111+36188116..36190751stigma/style ABC transporter, putative, expressed
LOC_Os01g61940Os.49930.1.S2_x_at1/111+36188116..36190751stigma/style ABC transporter, putative, expressed
LOC_Os01g61950OsAffx.21764.1.S1_at11/111+36193638..36194192hypothetical protein
LOC_Os01g61960OsAffx.23888.1.S1_at11/111+36195770..36196597hypothetical protein
LOC_Os01g61970Os.6681.1.S1_at10/111+36197920..36200047Lung seven transmembrane receptor family protein, expressed
LOC_Os01g61980Os.6795.1.S1_at11/111+36207873..36209261expressed protein
LOC_Os01g61990Os.16933.1.S1_at10/111+36211621..36215258ankyrin repeat family protein, putative, expressed
LOC_Os01g62000OsAffx.11689.1.S1_s_at11/111+36216652..36218214Pectate lyase family protein
LOC_Os01g62010Os.36919.2.S1_s_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_x_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62020Os.9835.2.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020Os.9835.1.S1_a_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020OsAffx.11691.1.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6681.1.S1_at--895--3171Chr01:36198423..36198447 (25 bp)
AATTGGGCTGCTTGTGTTGCAAATT
LOC_Os01g61970
Os.6681.1.S1_at--808--3091Chr01:36198367..36198391 (25 bp)
AATACTCAGGTTTGCTTCTTCGTAC
LOC_Os01g61970
Os.6681.1.S1_at--1051--10551Chr01:36198352..36198376 (25 bp)
TTCTTCGTACTTATCAGCTGTTCTT
LOC_Os01g61970
Os.6681.1.S1_at--201--6731Chr01:36198333..36198357 (25 bp)
GTTCTTTATCATTTACGAGCTGTAG
LOC_Os01g61970
Os.6681.1.S1_at--461--2091Chr01:36198168..36198192 (25 bp)
ACATCTGGTTGCTTAGGTTCTTTAT
LOC_Os01g61970
Os.6681.1.S1_at--895--7891Chr01:36198153..36198177 (25 bp)
GGTTCTTTATGCATGACTGGCAGAC
LOC_Os01g61970
Os.6681.1.S1_at--97--7351Chr01:36198105..36198129 (25 bp)
GTGAATCACTTGTAAGGCCCAGAGT
LOC_Os01g61970
Os.6681.1.S1_at--918--8391Chr01:36198090..36198114 (25 bp)
GGCCCAGAGTAGCATCTAGTTGACA
LOC_Os01g61970
Os.6681.1.S1_at--245--271Chr01:36197998..36198022 (25 bp)
ATATGGGCTATCGTGCTATTCTGTA
LOC_Os01g61970
Os.6681.1.S1_at--133--71Chr01:36197974..36197998 (25 bp)
ATTGCTATAAGCTCACAGTTCATCT
LOC_Os01g61970
Os.6681.1.S1_at--296--6751NONE
GTTCATCTTGACTGTTGATATGCCA
NONE
Target Sequence 
AATTGGGCTGCTTGTGTTGCAAATTAGGGGCATTTATTCAATGTTGCCATTTTNGCCAATACTCAGGTTTGCTTCTTCGT
ACTTATCAGCTGTTCTTTATCATTTACGAGCTGTAGAATTTTGTTGCTATCGGGATAACATTGGTAGATATGACTTCATA
CCTAGGTTCATGATTTTATAGGTGGGTTATTAGGAATGAGTGACAGAACTATAGAAGGGGACACCAACTATGCAATATAT
GCTTATTGGTGTATCAACATCTGGTTGCTTAGGTTCTTTATGCATGACTGGCAGACTGGGTAGCAAATAAACATAGTAGG
TGAATCACTTGTAAGGCCCAGAGTAGCATCTAGTTGACATGCTTCATTAATCTTGATGGCTTGATGCATGAATGTAATGC
ATCTTGAACCAGCGAAACAGCAGATCATATGGGCTATCGTGCTATTCTGTATTGCTATAAGCTCACAGTTCATCTTGACT
GTTGATATGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis