Browse Element(s) Details


OsAffx.23888.1.S1_at

Description tigr:9629.m06111
TID=OsAffx.23888.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6196011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61930Os.35165.1.S1_at11/111+36171524..36181814SAC3/GANP family protein, expressed
LOC_Os01g61930Os.8716.1.S1_at11/111+36171524..36181814SAC3/GANP family protein, expressed
LOC_Os01g61940Os.35425.1.S1_at11/111+36188116..36190751stigma/style ABC transporter, putative, expressed
LOC_Os01g61940Os.49930.1.S2_x_at1/111+36188116..36190751stigma/style ABC transporter, putative, expressed
LOC_Os01g61950OsAffx.21764.1.S1_at11/111+36193638..36194192hypothetical protein
LOC_Os01g61960OsAffx.23888.1.S1_at11/111+36195770..36196597hypothetical protein
LOC_Os01g61970Os.6681.1.S1_at10/111+36197920..36200047Lung seven transmembrane receptor family protein, expressed
LOC_Os01g61980Os.6795.1.S1_at11/111+36207873..36209261expressed protein
LOC_Os01g61990Os.16933.1.S1_at10/111+36211621..36215258ankyrin repeat family protein, putative, expressed
LOC_Os01g62000OsAffx.11689.1.S1_s_at11/111+36216652..36218214Pectate lyase family protein
LOC_Os01g62010Os.36919.2.S1_s_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_x_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23888.1.S1_at--735--2571Chr01:36196312..36196336 (25 bp)
AACGTGCCGTGCTTGGCGTTGCGTC
LOC_Os01g61960
OsAffx.23888.1.S1_at--383--4931Chr01:36196302..36196326 (25 bp)
GCTTGGCGTTGCGTCTTGTCAAGAA
LOC_Os01g61960
OsAffx.23888.1.S1_at--419--3611Chr01:36196288..36196312 (25 bp)
CTTGTCAAGAATGCCATGCTCTTCC
LOC_Os01g61960
OsAffx.23888.1.S1_at--754--871Chr01:36196212..36196236 (25 bp)
AGGCCCGTGAGCTGAACGTGTTGAC
LOC_Os01g61960
OsAffx.23888.1.S1_at--1019--6631Chr01:36196193..36196217 (25 bp)
GTTGACGGCGATGGTTCCGCTCCAG
LOC_Os01g61960
OsAffx.23888.1.S1_at--680--10651Chr01:36196179..36196203 (25 bp)
TTCCGCTCCAGGTCTACATGGCGAT
LOC_Os01g61960
OsAffx.23888.1.S1_at--621--8751Chr01:36195948..36195972 (25 bp)
TGTACCTGTACCACACGTGGATGGC
LOC_Os01g61960
OsAffx.23888.1.S1_at--805--871Chr01:36195928..36195952 (25 bp)
ATGGCCGTGTTCATCCTGAAGTTGC
LOC_Os01g61960
OsAffx.23888.1.S1_at--1065--551Chr01:36195916..36195940 (25 bp)
ATCCTGAAGTTGCTCGTGGGCGCAA
LOC_Os01g61960
OsAffx.23888.1.S1_at--779--731Chr01:36195826..36195850 (25 bp)
ATGTTCTGCATGTTCAGTCCGGCCG
LOC_Os01g61960
OsAffx.23888.1.S1_at--265--4271Chr01:36195808..36195832 (25 bp)
CCGGCCGAGGAGGATATTCAGCTTG
LOC_Os01g61960
Target Sequence 
AACGTGCCGTGCTTGGCGTTGCGTCTTGTCAAGAATGCCATGCTCTTCCCCGTGGTCGCGCTGATCGGCGCAGGGTGGTC
GCTCCCGGAGCCGTTCGTGCAGGCCCGTGAGCTGAACGTGTTGACGGCGATGGTTCCGCTCCAGGTCTACATGGCGATCG
CCACCACCTTGTCCGGCGACGGAGGCGTGGCCTGGACGTGGGGCCACGCCTTCGTCCTAGTCCAGCTCGCCTGCTGCGTC
GCGGTGCTGATGCCGATGGGCAGGGCGATCCGGGCGCTACGGAAGGAGGCCGACACGGACGACAAGGCGGCGCGGAGGCT
CGGCAAGCTCGCGCTGTTCCGCCAGCTCTACCTCGCGGTGGCGGTGTACCTGTACCACACGTGGATGGCCGTGTTCATCC
TGAAGTTGCTCGTGGGCGCAAGTTCCGGTTACCGTTGGGCGAGCGTGGCGGTGGATGAGGCGGCCGCCCTCGCATTCTAC
CTGTTCATGTTCTGCATGTTCAGTCCGGCCGAGGAGGATATTCAGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis