Browse Element(s) Details


Os.33587.1.S2_at

Description gb:AK100008.1
DB_XREF= gi:32985217
TID=Os.33587.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33587 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013136M08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013136M08, full insert sequence.
FL= gb:AK119505.1 gb:AK100008.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0818011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08140Os.18587.1.S1_at11/117+4137460..4140736Heat shock factor protein HSF30, putative, expressed
LOC_Os07g08150OsAffx.24280.2.S1_at11/117+4141640..4142873early light-inducible protein ELIP, putative, expressed
LOC_Os07g08150Os.57519.1.S1_x_at3/117+4141640..4142873early light-inducible protein ELIP, putative, expressed
LOC_Os07g08160Os.57519.1.S1_x_at1/117+4144214..4145153Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os07g08170Os.11839.1.S1_s_at11/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08170Os.38033.3.S1_x_at2/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08170Os.38033.3.S1_at1/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08180Os.33587.1.S2_at11/117+4154503..4158091pentatricopeptide, putative, expressed
LOC_Os07g08180Os.33587.1.S1_x_at11/117+4154503..4158091pentatricopeptide, putative, expressed
LOC_Os07g08190Os.14272.1.A1_at11/117+4173780..4179946peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g08200OsAffx.16151.1.S1_at11/117+4180344..418234837 kDa inner envelope membrane protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33587.1.S2_at--196--4171Chr07:4157588..4157612 (25 bp)
CCCATATCAAGTCCCGATGCTTAAT
LOC_Os07g08180
Os.33587.1.S2_at--1076--2471Chr07:4157616..4157640 (25 bp)
AACAGAGTGCATGGTTTCCTGCCGT
LOC_Os07g08180
Os.33587.1.S2_at--444--6831Chr07:4157629..4157653 (25 bp)
GTTTCCTGCCGTTTAACATTCATTG
LOC_Os07g08180
Os.33587.1.S2_at--371--10171Chr07:4157660..4157684 (25 bp)
TATCTTCAATTTACGAGCTGGTGTT
LOC_Os07g08180
Os.33587.1.S2_at--1015--4711Chr07:4157676..4157700 (25 bp)
GCTGGTGTTGAGAGCCTGAACTAAT
LOC_Os07g08180
Os.33587.1.S2_at--393--7391Chr07:4157712..4157736 (25 bp)
GTGAGTCAACTCTTCCATGATATGT
LOC_Os07g08180
Os.33587.1.S2_at--627--3511Chr07:4157727..4157751 (25 bp)
CATGATATGTCCTCCGTTTTAGTAT
LOC_Os07g08180
Os.33587.1.S2_at--54--7931Chr07:4157755..4157779 (25 bp)
GGATTCGACTGGACCATTTATGCAA
LOC_Os07g08180
Os.33587.1.S2_at--691--6771Chr07:4157831..4157855 (25 bp)
GTTACATAAATCCATGCACACCCTT
LOC_Os07g08180
Os.33587.1.S2_at--687--8591Chr07:4158019..4158043 (25 bp)
TGGTAATGTGCCTTCATCCCTGTAT
LOC_Os07g08180
Os.33587.1.S2_at--1155--3531Chr07:4158033..4158057 (25 bp)
CATCCCTGTATCCTACTACATATGT
LOC_Os07g08180
Target Sequence 
CCCATATCAAGTCCCGATGCTTAATAAAAACAGAGTGCATGGTTTCCTGCCGTTTAACATTCATTGTTTATTTATCTTCA
ATTTACGAGCTGGTGTTGAGAGCCTGAACTAATGGACTAATTTTGTGAGTCAACTCTTCCATGATATGTCCTCCGTTTTA
GTATTTAGGATTCGACTGGACCATTTATGCAAACACACAACACTGACACCTATGTCCCCAGTTGGCCAGTCACTTGGTTA
ATGGTTACATAAATCCATGCACACCCTTGCTTGTAGCTAAGTATTATTTCATTTTACTTTTAAATTCAAGATTGCCAATC
TTTTGTGTAATTGCTAATAGCAGTACTGTATTTTGACATAGCAGAGATAATTAAAGCAATTTTCATCGTTTTGTTTTATC
ATGTCTCAATATTTTATGCATGTATGGTAAATGGTAATGTGCCTTCATCCCTGTATCCTACTACATATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33587.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis