Browse Element(s) Details


Os.19036.1.S1_at

Description gb:AK106597.1
DB_XREF= gi:32991806
TID=Os.19036.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19036 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-A10, full insert sequence.
FL= gb:AK106597.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1570011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15650Os.38751.1.A1_at9/116+8864337..8865720retrotransposon protein, putative, unclassified
LOC_Os06g15650Os.49802.1.S2_at1/116+8864337..8865720retrotransposon protein, putative, unclassified
LOC_Os06g15650OsAffx.28492.1.S1_at1/116+8864337..8865720retrotransposon protein, putative, unclassified
LOC_Os06g15660Os.54287.1.S1_at10/116+8867034..8868887expressed protein
LOC_Os06g15670OsAffx.27654.1.S1_at11/116+8871485..8873865hypothetical protein
LOC_Os06g15680OsAffx.24230.1.S1_at1/116+8875052..8876758Cytochrome P450 family protein
LOC_Os06g15680OsAffx.24230.1.S1_x_at1/116+8875052..8876758Cytochrome P450 family protein
LOC_Os06g15680Os.54620.1.A1_at1/116+8875052..8876758Cytochrome P450 family protein
LOC_Os06g15690Os.24746.1.S1_at11/116+8879085..8883818no apical meristem, putative, expressed
LOC_Os06g15700Os.19036.1.S1_at11/116+8890134..8902219expressed protein
LOC_Os06g15710NANA6+8903525..8903881retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g15720NANA6+8908222..8908679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g15730Os.50213.1.S1_at11/116+8912932..8916865expressed protein
LOC_Os06g15740OsAffx.4847.1.S1_at10/116+8924129..8929445hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19036.1.S1_at--1113--8411Chr06:8901655..8901679 (25 bp)
GGCCTCCTCAATTGTAGACTTCCAT
LOC_Os06g15700
Os.19036.1.S1_at--771--1331Chr06:8901685..8901709 (25 bp)
AGAGGTGGTCTGTTCATTCTTTTGC
LOC_Os06g15700
Os.19036.1.S1_at--292--7111Chr06:8901798..8901822 (25 bp)
GTCAGATTTCCACACTAGCAATCCA
LOC_Os06g15700
Os.19036.1.S1_at--926--211Chr06:8901826..8901850 (25 bp)
ATTTGTGAATCAGTGCCATCTCCGA
LOC_Os06g15700
Os.19036.1.S1_at--834--351Chr06:8901868..8901892 (25 bp)
ATAATCCATCTCCTCTGCAGGTGTA
LOC_Os06g15700
Os.19036.1.S1_at--429--8751Chr06:8901889..8901913 (25 bp)
TGTACAGTTTCAGATGCCACGTCGA
LOC_Os06g15700
Os.19036.1.S1_at--555--4391Chr06:8901904..8901928 (25 bp)
GCCACGTCGAAAACCTTCATACTGT
LOC_Os06g15700
Os.19036.1.S1_at--867--8171Chr06:8901985..8902009 (25 bp)
GGAAGTTTTGTTGACTCCTTGCTTA
LOC_Os06g15700
Os.19036.1.S1_at--663--8311Chr06:8902045..8902069 (25 bp)
GGCTCGGTGGCTCTTGTACATAAAT
LOC_Os06g15700
Os.19036.1.S1_at--1132--8731Chr06:8902097..8902121 (25 bp)
TGTAAATATCTCTCTTGTTTCTCGG
LOC_Os06g15700
Os.19036.1.S1_at--76--1431Chr06:8902149..8902173 (25 bp)
AGAAACTGCTCACTGTAACTCTCAC
LOC_Os06g15700
Target Sequence 
GGCCTCCTCAATTGTAGACTTCCATTGAGAAGAGGTGGTCTGTTCATTCTTTTGCGAGATCTCGTATTTACCNTGGAAGA
ACTGGTTNCAANGAGCNNACATGNTGTGCNATCTCATCAAANNNGGGTGGTGGNCAAACTTGTACAGGATAAGTCAGATT
TCCACACTAGCAATCCAACCATTTGTGAATCAGTGCCATCTCCGATGTTCTTGTTGGAGTTCATAATCCATCTCCTCTGC
AGGTGTACAGTTTCAGATGCCACGTCGAAAACCTTCATACTGTAAATTACTAGCACACGATCACNGGTTGTAATCACNAA
ACGTGGCCACCCNGGAGCGGGTGGAAGTTTTGTTGACTCCTTGCTTAGGATTTGGCTAGAGAGAGAGGGTCACAGGGAGC
TTGGCTCGGTGGCTCTTGTACATAAATTTGGTGGTGATTACTGAGTAGTGCNAATGTAAATATCTCTCTTGTTTCTCGGT
TTTCCATTTACGTTTTTGTTGGTTTGAGAAACTGCTCACTGTAACTCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis