Browse Element(s) Details


Os.54620.1.A1_at

Description gb:AK106267.1
DB_XREF= gi:32991476
TID=Os.54620.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-G03, full insert sequence.
FL= gb:AK106267.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3881011/11expressed protein
LOC_Os05g439101/11Cytochrome P450 family protein, expressed
LOC_Os06g156801/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38780Os.53835.1.S1_at9/1112+23790291..23795978Diacylglycerol kinase 1, putative, expressed
LOC_Os12g38790OsAffx.7832.1.S1_at10/1112+23798169..23800677Targeting protein for Xklp2 containing protein, expressed
LOC_Os12g38800Os.50914.1.S1_at11/1112+23808301..23811671RNA recognition motif family protein, expressed
LOC_Os12g38810Os.54620.1.A1_at11/1112+23817358..23818799expressed protein
LOC_Os12g38820OsAffx.20015.1.S1_at10/1112+23825019..23825937hypothetical protein
LOC_Os12g38820OsAffx.20015.1.S1_x_at9/1112+23825019..23825937hypothetical protein
LOC_Os12g38820Os.52861.1.S1_at4/1112+23825019..23825937hypothetical protein
LOC_Os12g38830NANA12+23827102..23827452hypothetical protein
LOC_Os12g38840Os.14491.2.S1_x_at1/1112+23830041..23832899transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54620.1.A1_at--765--4733Chr12:23818359..23818383 (25 bp)
GCTGTTCCAGCTCCGCGTCGTGTCG
LOC_Os12g38810
Os.54620.1.A1_at--672--4651Chr12:23818373..23818397 (25 bp)
GCGTCGTGTCGCAGGCGCAACGCCA
LOC_Os12g38810
Os.54620.1.A1_at--1131--4611Chr12:23818448..23818472 (25 bp)
GCGAGGCGTTCTCCATCGCGTACAT
LOC_Os12g38810
Os.54620.1.A1_at--988--7311Chr12:23818489..23818513 (25 bp)
GTGCTCGAGATCATCGTGAGCTGCA
LOC_Os12g38810
Os.54620.1.A1_at--713--6431Chr12:23818497..23818521 (25 bp)
GATCATCGTGAGCTGCATGTTCTAC
LOC_Os12g38810
Os.54620.1.A1_at--919--8911Chr12:23818505..23818529 (25 bp)
TGAGCTGCATGTTCTACCGGAGTTG
LOC_Os12g38810
Os.54620.1.A1_at--748--3511Chr12:23818512..23818536 (25 bp)
CATGTTCTACCGGAGTTGCAGGAGA
LOC_Os12g38810
Os.54620.1.A1_at--1098--5771Chr12:23818546..23818570 (25 bp)
GACGAGCTCAGAGAGCTCGAGCCAG
LOC_Os12g38810
Os.54620.1.A1_at--1147--1451Chr12:23818574..23818598 (25 bp)
AGAAGGGTGACCTCCAAGCTTGAGC
LOC_Os12g38810
Os.54620.1.A1_at--17--1071Chr12:23818577..23818601 (25 bp)
AGGGTGACCTCCAAGCTTGAGCTCA
LOC_Os12g38810
Os.54620.1.A1_at--354--9011Chr12:23818775..23818799 (25 bp)
TGAATGGATGATTCTCTTGTACAGT
LOC_Os12g38810
Target Sequence 
GCTGTTCCAGCTCCGCGTCGTGTCGCAGGCGCAACGCCACCGCCTCGCCGGCGCCGGCGACGGCAAGAGGCTCGCGGCGG
GCGTCGCCGGCGAGGCGTTCTCCATCGCGTACATCCACGCGCTCTGCGTCGTGCTCGAGATCATCGTGAGCTGCATGTTC
TACCGGAGTTGCAGGAGAAGCGAGGTCGACGAGCTCAGAGAGCTCGAGCCAGAGGAGAAGGGTGACCTCCAAGCTTGAGC
TCAAGTGTAAAAGAAAGTGTTAAAAAAATTTTAAAAATGAATAGATGTAGCATTTGAAAATTTCAAATAGGTTTGAAATT
ATGATGAGCATATATGAATTGAGATAGAATTATTCTGGAAATTGTTTTTTTGTTTTGTTGGGAGTAAATTAATGGTATAT
TGGGGTTAATAAATAATGAATGGATGATTCTCTTGTACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54620.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis