Browse Element(s) Details


Os.53835.1.S1_at

Description gb:AK100331.1
DB_XREF= gi:32985540
TID=Os.53835.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53835 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080K21, full insert sequence.
FL= gb:AK100331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g387809/11Diacylglycerol kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38740OsAffx.22684.1.S1_at1/1112+23767656..23770018retrotransposon protein, putative, unclassified
LOC_Os12g38750Os.49226.1.S1_at11/1112+23771605..23775312diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38760Os.8256.1.S1_at10/1112+23776983..23780816diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38770OsAffx.20014.1.S1_at11/1112+23785749..23788794diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38770Os.49300.1.S1_at1/1112+23785749..23788794diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38780Os.53835.1.S1_at9/1112+23790291..23795978Diacylglycerol kinase 1, putative, expressed
LOC_Os12g38790OsAffx.7832.1.S1_at10/1112+23798169..23800677Targeting protein for Xklp2 containing protein, expressed
LOC_Os12g38800Os.50914.1.S1_at11/1112+23808301..23811671RNA recognition motif family protein, expressed
LOC_Os12g38810Os.54620.1.A1_at11/1112+23817358..23818799expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0009409biological_processresponse to cold
GO:0009611biological_processresponse to wounding
GO:0048364biological_processroot development
GO:0048366biological_processleaf development
GO:0004143molecular_functiondiacylglycerol kinase activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53835.1.S1_at--303--391Chr12:23790738..23790836 (25 bp)
ATCACTGCCAGGCTTTCATGCTGAA
LOC_Os12g38780
Os.53835.1.S1_at--1079--6071Chr12:23790711..23790735 (25 bp)
GAGTCTCCGAAGAACCTATCGGCCA
LOC_Os12g38780
Os.53835.1.S1_at--1081--4311Chr12:23790678..23790702 (25 bp)
CCATAATGGCCGACGTTCTGGAAAA
LOC_Os12g38780
Os.53835.1.S1_at--817--2571Chr12:23790643..23790667 (25 bp)
AACGGCATCATCACAGCGTCGCAGA
LOC_Os12g38780
Os.53835.1.S1_at--728--9991Chr12:23790597..23790621 (25 bp)
TAGCTTCTAGGCTTTTGTAGGGCAT
LOC_Os12g38780
Os.53835.1.S1_at--68--8771Chr12:23790582..23790606 (25 bp)
TGTAGGGCATACTTCCACGTTGATT
LOC_Os12g38780
Os.53835.1.S1_at--975--5871Chr12:23790543..23790567 (25 bp)
GAGCCCCTGCCAAACTGGACATGAT
LOC_Os12g38780
Os.53835.1.S1_at--1022--3231Chr12:23790506..23790530 (25 bp)
CAAGCATGATTGTTTTTCCCCACTT
LOC_Os12g38780
Os.53835.1.S1_at--79--10371Chr12:23790494..23790518 (25 bp)
TTTTTCCCCACTTTGATTGTGCTTG
LOC_Os12g38780
Os.53835.1.S1_at--572--6531Chr12:23790279..23790303 (25 bp)
GATTTCCAGTGCTAATCTGCGCTTC
NONE
Os.53835.1.S1_at--513--4911Chr12:23790259..23790283 (25 bp)
GCTTCTCTTATTCTCATGTGGTGTG
NONE
Target Sequence 
ATCACTGCCAGGCTTTCATGCTGAAGAGAGTCTCCGAAGAACCTATCGGCCATGCGGCCTCCATAATGGCCGACGTTCTG
GAAAACGCCGAGAANAACGGCATCATCACAGCGTCGCAGAAGAGGACCCTCCTCCACGAAATAGCTTCTAGGCTTTTGTA
GGGCATACTTCCACGTTGATTGGAGGCTTCTTTNTGAGCCCCTGCCAAACTGGACATGATCATTTGTACATACAAGCATG
ATTGTTTTTCCCCACTTTGATTGTGCTTGTGTATAGTTTGTAAATTTTTTGTAGAGCTCGTGAGATGAGANCATAGGTGC
TTANAGCNCTACCTGGACATAACTGGAAAGCAGTGGCTTTAGAGCTGAGAAATGTGNTACCCACTGNAACCCAGTTNGCC
NTGGCATTNTGGNACGCTTGCTAAAGCAGTGATACCNCTACNCCAGTTTATTATTATTCCAGATTTCCAGTGCTAATCTG
CGCTTCTCTTATTCTCATGTGGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis