Browse Element(s) Details


Os.49226.1.S1_at

Description gb:AK121432.1
DB_XREF= gi:37991055
TID=Os.49226.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49226 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138J08, full insert sequence.
FL= gb:AK065128.1 gb:AK121432.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3875011/11diphosphonucleotide phosphatase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38710OsAffx.22848.4.S1_x_at3/1112+23745845..23748682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38710OsAffx.22848.3.S1_x_at3/1112+23745845..23748682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38710OsAffx.22848.4.S1_at2/1112+23745845..23748682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38720Os.11518.1.S1_at4/1112+23749386..23749984expressed protein
LOC_Os12g38730Os.19448.1.S1_at11/1112+23760790..23764405expressed protein
LOC_Os12g38740OsAffx.22684.1.S1_at1/1112+23767656..23770018retrotransposon protein, putative, unclassified
LOC_Os12g38750Os.49226.1.S1_at11/1112+23771605..23775312diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38760Os.8256.1.S1_at10/1112+23776983..23780816diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38770OsAffx.20014.1.S1_at11/1112+23785749..23788794diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38770Os.49300.1.S1_at1/1112+23785749..23788794diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38780Os.53835.1.S1_at9/1112+23790291..23795978Diacylglycerol kinase 1, putative, expressed
LOC_Os12g38790OsAffx.7832.1.S1_at10/1112+23798169..23800677Targeting protein for Xklp2 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49226.1.S1_at--31--3471Chr12:23772181..23772205 (25 bp)
CAGTGTGTCGTTAACGCTTCGGATC
LOC_Os12g38750
Os.49226.1.S1_at--291--9771Chr12:23772170..23772194 (25 bp)
TAACGCTTCGGATCACTACAACGGC
LOC_Os12g38750
Os.49226.1.S1_at--461--9851Chr12:23772154..23772178 (25 bp)
TACAACGGCCCATTCAAAGCGACGA
LOC_Os12g38750
Os.49226.1.S1_at--123--7791Chr12:23772106..23772130 (25 bp)
GGTGCCAGCCTTTCAGAATTCACCA
LOC_Os12g38750
Os.49226.1.S1_at--87--2151Chr12:23772055..23772079 (25 bp)
ACAGACTTTGACTTCGGCTTCGTGA
LOC_Os12g38750
Os.49226.1.S1_at--964--3331Chr12:23772026..23772050 (25 bp)
CACGGCTTTCAATCATTCATCCATG
LOC_Os12g38750
Os.49226.1.S1_at--102--8471Chr12:23771925..23771949 (25 bp)
TGGCCTGCTCAGTTGACAATTGTCC
LOC_Os12g38750
Os.49226.1.S1_at--426--6051Chr12:23771848..23771872 (25 bp)
GAGATTGGTTTGATGTGGCCTCTTA
LOC_Os12g38750
Os.49226.1.S1_at--361--6951Chr12:23771816..23771840 (25 bp)
GTAGTTGCTGCACATTAGTTCTTTT
LOC_Os12g38750
Os.49226.1.S1_at--1035--10351Chr12:23771703..23771727 (25 bp)
TTTTTGCTCTAACCTGGACACCTGA
LOC_Os12g38750
Os.49226.1.S1_at--515--1011Chr12:23771670..23771694 (25 bp)
AGGTTCAGAATGTCAGCCAGTTGCA
LOC_Os12g38750
Target Sequence 
CAGTGTGTCGTTAACGCTTCGGATCACTACAACGGCCCATTCAAAGCGACGACGCATGTGGTCGTTGGAGGTGGTGGTGC
CAGCCTTTCAGAATTCACCACTTCAAAGATCAAATGGAGTCACTACACAGACTTTGACTTCGGCTTCGTGAAGCTCACGG
CTTTCAATCATTCATCCATGCTATTCGAGTACAAGAANAGCCGCGACGGCAATGTGTATGATCATTTCACAATCTCACGC
GATTACCGGGACATCCTGGCCTGCTCAGTTGACAATTGTCCTCGGACCACACTGGCTACCTAANGCATGAACGGCTCTAG
ATGGGTGAGAATTGAGATTGGTTTGATGTGGCCTCTTAGAGAACTGTAGTTGCTGCACATTAGTTCTTTTTGGGACTGTA
CCAATAAATCTAATAAGCACAGAATTTTCTTGGCTGTGTATTTTGTTTTGTTGTAGCAGTAGATGAAATTCTGAATGGTT
TTTGCTCTAACCTGGACACCTGATGATGAATAGGTTCAGAATGTCAGCCAGTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis