Browse Element(s) Details


Os.19448.1.S1_at

Description gb:AK058735.1
DB_XREF= gi:32968753
TID=Os.19448.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013147P19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-G02, full insert sequence.
FL= gb:AK058735.1 gb:AK068258.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3873011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38700NANA12+23739166..23739549retrotransposon protein, putative, unclassified
LOC_Os12g38710OsAffx.22848.4.S1_x_at3/1112+23745845..23748682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38710OsAffx.22848.3.S1_x_at3/1112+23745845..23748682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38710OsAffx.22848.4.S1_at2/1112+23745845..23748682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g38720Os.11518.1.S1_at4/1112+23749386..23749984expressed protein
LOC_Os12g38730Os.19448.1.S1_at11/1112+23760790..23764405expressed protein
LOC_Os12g38740OsAffx.22684.1.S1_at1/1112+23767656..23770018retrotransposon protein, putative, unclassified
LOC_Os12g38750Os.49226.1.S1_at11/1112+23771605..23775312diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38760Os.8256.1.S1_at10/1112+23776983..23780816diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38770OsAffx.20014.1.S1_at11/1112+23785749..23788794diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38770Os.49300.1.S1_at1/1112+23785749..23788794diphosphonucleotide phosphatase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19448.1.S1_at--1152--2731Chr12:23761351..23761375 (25 bp)
AAGAACCTGCTCAGACAGTGATTCT
LOC_Os12g38730
Os.19448.1.S1_at--839--7391Chr12:23761326..23761350 (25 bp)
GGTTCTCCCAACCAGGAAAGTCCAG
LOC_Os12g38730
Os.19448.1.S1_at--586--9811Chr12:23761285..23761309 (25 bp)
TAACTCCTTGGTAGAACCGTTCTGT
LOC_Os12g38730
Os.19448.1.S1_at--645--1391Chr12:23761246..23761270 (25 bp)
AGACGCGCTAGAGGCTTACGATGAA
LOC_Os12g38730
Os.19448.1.S1_at--948--10511Chr12:23761209..23761233 (25 bp)
TTCATGAGAATTGCGGACTCCCCTT
LOC_Os12g38730
Os.19448.1.S1_at--130--10731Chr12:23761186..23761210 (25 bp)
TTGCACCACAAGTACCAACGGGAAG
LOC_Os12g38730
Os.19448.1.S1_at--608--3251Chr12:23761171..23761195 (25 bp)
CAACGGGAAGCCTCAAGTTCATGAA
LOC_Os12g38730
Os.19448.1.S1_at--212--3491Chr12:23761152..23761176 (25 bp)
CATGAAGATTACTCGGTGGACCGCA
LOC_Os12g38730
Os.19448.1.S1_at--856--5851Chr12:23761079..23761103 (25 bp)
TGCCCACTTGGGAGCGAATTTTAAA
LOC_Os12g38730
Os.19448.1.S1_at--1019--911Chr12:23760940..23760964 (25 bp)
AGGCTCACCTGTACTAATTCATGCT
LOC_Os12g38730
Os.19448.1.S1_at--944--151Chr12:23760822..23760846 (25 bp)
ATTATTCTTTTCATCATCTTCCGGT
LOC_Os12g38730
Target Sequence 
AAGAACCTGCTCAGACAGTGATTCTNGGTTCTCCCAACCAGGAAAGTCCAGTGTATATACAAGAAACTAACTCCTTGGTA
GAACCGTTCTGTCTAAACCTANCTGGAGACGCGCTAGAGGCTTACGATGAAGCTTATGAGGAATTCATGAGAATTGCGGA
CTCCCCTTGCACCACAAGTACCAACGGGAAGCCTCAAGTTCATGAAGATTACTCGGTGGACCGCAGCTTGATCTGGGGCT
TGGAGGATGNNAGTGCAAGGAAGCTGAAAAAAGTGCCCACTTGGGAGCGAATTTTAAAGAGCAGAGAGCCTAACAGAACT
CAGGAGAGTGACGGAGATGNATGAAGATGAATTTGAAGATGATGACCANGGATAGTAAGATGCTCATCCNACAGATTATA
GAGAGAACTAAACAAGGCTCACCTGTACTAATTCATGCTCAAAGAATNTTGTTTTCTGTGGATGATTAGATTGTTGGACT
ATATTGAATTAGAATTTAGTGCCAATTGATTGTTTAGAGAAAAAAACATAATATTATTCTTTTCATCATCTTCCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis