Browse Element(s) Details


Os.8256.1.S1_at

Description gb:AK073512.1
DB_XREF= gi:32983535
TID=Os.8256.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043B10, full insert sequence.
FL= gb:AK073512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3876010/11diphosphonucleotide phosphatase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38730Os.19448.1.S1_at11/1112+23760790..23764405expressed protein
LOC_Os12g38740OsAffx.22684.1.S1_at1/1112+23767656..23770018retrotransposon protein, putative, unclassified
LOC_Os12g38750Os.49226.1.S1_at11/1112+23771605..23775312diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38760Os.8256.1.S1_at10/1112+23776983..23780816diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38770OsAffx.20014.1.S1_at11/1112+23785749..23788794diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38770Os.49300.1.S1_at1/1112+23785749..23788794diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38780Os.53835.1.S1_at9/1112+23790291..23795978Diacylglycerol kinase 1, putative, expressed
LOC_Os12g38790OsAffx.7832.1.S1_at10/1112+23798169..23800677Targeting protein for Xklp2 containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8256.1.S1_at--454--10511Chr12:23777773..23777797 (25 bp)
TTCTATGGCCATGTCCACAACTATG
LOC_Os12g38760
Os.8256.1.S1_at--424--5491Chr12:23777750..23777769 (20 bp)
GAACATGCCCAGTCTATCAGAATAA
LOC_Os12g38760
Os.8256.1.S1_at--657--6751Chr12:23777472..23777496 (25 bp)
GTTCAGATCATTACAGTGGTCCTTT
LOC_Os12g38760
Os.8256.1.S1_at--970--8591Chr12:23777414..23777438 (25 bp)
TGGTGCTGGTACCTCCGACTCAGAA
LOC_Os12g38760
Os.8256.1.S1_at--445--9651Chr12:23777359..23777383 (25 bp)
TACAGGGACTTTGACTACGGTTTTG
LOC_Os12g38760
Os.8256.1.S1_at--1041--9911Chr12:23777344..23777368 (25 bp)
TACGGTTTTGTCAAGCTCACAGCTT
LOC_Os12g38760
Os.8256.1.S1_at--394--1911Chr12:23777246..23777270 (25 bp)
ACGTGATTACCGAGACATCCTGGCT
LOC_Os12g38760
Os.8256.1.S1_at--627--5671Chr12:23777233..23777257 (25 bp)
GACATCCTGGCTTGTTCAATTGACA
LOC_Os12g38760
Os.8256.1.S1_at--106--1371Chr12:23777126..23777150 (25 bp)
AGAGCAATCTAGTTCCTGTACAAAG
LOC_Os12g38760
Os.8256.1.S1_at--1046--3331Chr12:23777068..23777092 (25 bp)
CACGGAATTTTCTTGACTGCGTACT
LOC_Os12g38760
Os.8256.1.S1_at--26--3111NONE
AATAGGTTCAGCATGGCAGCCAATT
NONE
Target Sequence 
TTCTATGGCCATGTCCACAACTATGAAAGAACATGCCCAGTCTATCAGAATAAATGTGTTGTTAGTGGTTCAGATCATTA
CAGTGGTCCTTTCACCGCGACAACACATGTGGTCGTTGGAGGTGCTGGTGCTGGTACCTCCGACTCAGAATTCACCACTT
CAAATATCAAATGGAGTTACTACAGGGACTTTGACTACGGTTTTGTCAAGCTCACAGCTTTAAATCATTCATCCTTATTG
TTTGAGTACAAGAAAAGCAGTGACGGCAATGTGTATGATCATTTCACAATCTCACGTGATTACCGAGACATCCTGGCTTG
TTCAATTGACAACTGTCCTCGGACCACACTGGCTACCTAAAGCATGAACAGTTCTAGACAGGTTTACAGGTAGATTGATT
GACAGGGCCTCAAAGAGCAATCTAGTTCCTGTACAAAGTCTTTTGGGACTATTCCAATAAATCATAATAAACACGGAATT
TTCTTGACTGCGTACTTNGTTTTGTTGTACCAGTAGATNAANTTCTGAATGTAATTTGCTCTTACTTAATGATAAATAGG
TTCAGCATGGCAGCCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis