Browse Element(s) Details


OsAffx.7832.1.S1_at

Description tigr:9640.m03777
TID=OsAffx.7832.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3879010/11Targeting protein for Xklp2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38750Os.49226.1.S1_at11/1112+23771605..23775312diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38760Os.8256.1.S1_at10/1112+23776983..23780816diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38770OsAffx.20014.1.S1_at11/1112+23785749..23788794diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38770Os.49300.1.S1_at1/1112+23785749..23788794diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38780Os.53835.1.S1_at9/1112+23790291..23795978Diacylglycerol kinase 1, putative, expressed
LOC_Os12g38790OsAffx.7832.1.S1_at10/1112+23798169..23800677Targeting protein for Xklp2 containing protein, expressed
LOC_Os12g38800Os.50914.1.S1_at11/1112+23808301..23811671RNA recognition motif family protein, expressed
LOC_Os12g38810Os.54620.1.A1_at11/1112+23817358..23818799expressed protein
LOC_Os12g38820OsAffx.20015.1.S1_at10/1112+23825019..23825937hypothetical protein
LOC_Os12g38820OsAffx.20015.1.S1_x_at9/1112+23825019..23825937hypothetical protein
LOC_Os12g38820Os.52861.1.S1_at4/1112+23825019..23825937hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7832.1.S1_at--210--7631Chr12:23799801..23799825 (25 bp)
GGGAAAGAGCCCACTGAACCGATTG
LOC_Os12g38790
OsAffx.7832.1.S1_at--705--2771Chr12:23799805..23799829 (25 bp)
AAGAGCCCACTGAACCGATTGATGT
LOC_Os12g38790
OsAffx.7832.1.S1_at--644--3331Chr12:23799812..23799836 (25 bp)
CACTGAACCGATTGATGTTGTGCTA
LOC_Os12g38790
OsAffx.7832.1.S1_at--720--6631Chr12:23799828..23799852 (25 bp)
GTTGTGCTACATAGCGAGATTCGCT
LOC_Os12g38790
OsAffx.7832.1.S1_at--874--1251Chr12:23799844..23799868 (25 bp)
AGATTCGCTCTGTCGGTCGCGCCAG
LOC_Os12g38790
OsAffx.7832.1.S1_at--357--4211Chr12:23799865..23799968 (25 bp)
CCAGGTTCGATCACCAAGTGGCCGA
LOC_Os12g38790
OsAffx.7832.1.S1_at--208--9391Chr12:23799871..23799974 (25 bp)
TCGATCACCAAGTGGCCGAACGTAA
LOC_Os12g38790
OsAffx.7832.1.S1_at--557--2831NONE
AAGTGGCCGAACGTAACAGCTTCCT
NONE
OsAffx.7832.1.S1_at--140--8471Chr12:23799962..23799986 (25 bp)
TGGCCGAACGTAACAGCTTCCTGGA
LOC_Os12g38790
OsAffx.7832.1.S1_at--671--4051Chr12:23799966..23799990 (25 bp)
CGAACGTAACAGCTTCCTGGAGAAA
LOC_Os12g38790
OsAffx.7832.1.S1_at--624--4911Chr12:23799977..23800001 (25 bp)
GCTTCCTGGAGAAACTGAACATGGA
LOC_Os12g38790
Target Sequence 
GGGAAAGAGCCCACTGAACCGATTGATGTTGTGCTACATAGCGAGATTCGCTCTGTCGGTCGCGCCAGGTTCGATCACCA
AGTGGCCGAACGTAACAGCTTCCTGGAGAAACTGAACATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis