Browse Element(s) Details


Os.50914.1.S1_at

Description gb:AK059444.1
DB_XREF= gi:32969462
TID=Os.50914.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-A03, full insert sequence.
FL= gb:AK059444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3880011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38770OsAffx.20014.1.S1_at11/1112+23785749..23788794diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38770Os.49300.1.S1_at1/1112+23785749..23788794diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38780Os.53835.1.S1_at9/1112+23790291..23795978Diacylglycerol kinase 1, putative, expressed
LOC_Os12g38790OsAffx.7832.1.S1_at10/1112+23798169..23800677Targeting protein for Xklp2 containing protein, expressed
LOC_Os12g38800Os.50914.1.S1_at11/1112+23808301..23811671RNA recognition motif family protein, expressed
LOC_Os12g38810Os.54620.1.A1_at11/1112+23817358..23818799expressed protein
LOC_Os12g38820OsAffx.20015.1.S1_at10/1112+23825019..23825937hypothetical protein
LOC_Os12g38820OsAffx.20015.1.S1_x_at9/1112+23825019..23825937hypothetical protein
LOC_Os12g38820Os.52861.1.S1_at4/1112+23825019..23825937hypothetical protein
LOC_Os12g38830NANA12+23827102..23827452hypothetical protein
LOC_Os12g38840Os.14491.2.S1_x_at1/1112+23830041..23832899transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50914.1.S1_at--225--10071Chr12:23811096..23811120 (25 bp)
TAGTCCGCATTGAAAGATATCCAGA
LOC_Os12g38800
Os.50914.1.S1_at--1037--6151Chr12:23811240..23811264 (25 bp)
GAGGATACTTATCTGCTTCAAGGTA
LOC_Os12g38800
Os.50914.1.S1_at--638--7831Chr12:23811261..23811285 (25 bp)
GGTACAACACAAACATAGTCCCAGA
LOC_Os12g38800
Os.50914.1.S1_at--323--1031Chr12:23811296..23811320 (25 bp)
AGGTCATCTGCTGAATACTCTACTG
LOC_Os12g38800
Os.50914.1.S1_at--455--7771Chr12:23811383..23811407 (25 bp)
GGTGAACCCATCAGGCCAGAATCGA
LOC_Os12g38800
Os.50914.1.S1_at--387--2611Chr12:23811407..23811431 (25 bp)
AACCCACGTCGCTCAGGAAGCTTAT
LOC_Os12g38800
Os.50914.1.S1_at--477--6491Chr12:23811477..23811501 (25 bp)
GATTTACATCCCTGAACCAAAAGGA
LOC_Os12g38800
Os.50914.1.S1_at--199--2931Chr12:23811497..23811521 (25 bp)
AAGGACCATATACTGCTCTTGCATG
LOC_Os12g38800
Os.50914.1.S1_at--214--1991Chr12:23811508..23811532 (25 bp)
ACTGCTCTTGCATGTTGTAAACCTA
LOC_Os12g38800
Os.50914.1.S1_at--946--2631Chr12:23811527..23811551 (25 bp)
AACCTAGTGTATTTGATGTGCCTCA
LOC_Os12g38800
Os.50914.1.S1_at--398--6271Chr12:23811541..23811565 (25 bp)
GATGTGCCTCAGCATTGTAATGTTA
LOC_Os12g38800
Target Sequence 
TAGTCCGCATTGAAAGATATCCAGAACCAAGATTTGCACATGAACCAAGACAGGATACTGGAAGGCATCTCNATCTAGGG
TACGTACAAGAACGGAATTCGAATATTGAGAGATCAGCTCAAGTAGCTTTTTCATCTANGGAAGGAGGATACTTATCTGC
TTCAAGGTACAACACAAACATAGTCCCAGAATTCAGCTNCAGGTCATCTGCTGAATACTCTACTGNNCGCCAACAAGTAA
GGNTTGATCCATTCACAGGGGAACCATACAAGNTTGATCCCTACACCGGTGAACCCATCAGGCCAGAATCGAACCCACGT
CGCTCAGGAAGCTTATACTGACTTTGATTGATTGAAGCAACAGTTTGGATATGGTAGATTAGATTTACATCCCTGAACCA
AAAGGACCATATACTGCTCTTGCATGTTGTAAACCTAGTGTATTTGATGTGCCTCAGCATTGTAATGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis