Browse Element(s) Details


Os.49300.1.S1_at

Description gb:AK069059.1
DB_XREF= gi:32979083
TID=Os.49300.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004K04, full insert sequence.
FL= gb:AK069059.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g387701/11diphosphonucleotide phosphatase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38730Os.19448.1.S1_at11/1112+23760790..23764405expressed protein
LOC_Os12g38740OsAffx.22684.1.S1_at1/1112+23767656..23770018retrotransposon protein, putative, unclassified
LOC_Os12g38750Os.49226.1.S1_at11/1112+23771605..23775312diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38760Os.8256.1.S1_at10/1112+23776983..23780816diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38770OsAffx.20014.1.S1_at11/1112+23785749..23788794diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38770Os.49300.1.S1_at1/1112+23785749..23788794diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38780Os.53835.1.S1_at9/1112+23790291..23795978Diacylglycerol kinase 1, putative, expressed
LOC_Os12g38790OsAffx.7832.1.S1_at10/1112+23798169..23800677Targeting protein for Xklp2 containing protein, expressed
LOC_Os12g38800Os.50914.1.S1_at11/1112+23808301..23811671RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49300.1.S1_at--670--1092Chr12:23787964..23788120 (25 bp)
AGTGGCTTTTCCTGACAATTTTTCA
LOC_Os12g38770
Os.49300.1.S1_at--470--10771Chr02:6536440..6536464 (25 bp)
TTGAGAATCCAAAGGCACCCGTCTA
NONE
Os.49300.1.S1_at--963--7151Chr02:6536420..6536444 (25 bp)
GTCTACTCTCCGTTACAGCAAAGGA
NONE
Os.49300.1.S1_at--215--671Chr02:6536386..6536410 (25 bp)
ATGAAGTGAGCCCAATCTCCTTTCT
NONE
Os.49300.1.S1_at--1033--3051Chr02:6536373..6536397 (25 bp)
AATCTCCTTTCTTATTTACCAATGG
NONE
Os.49300.1.S1_at--459--2271Chr02:6536327..6536351 (25 bp)
AAATCGGTCATTTAGCTCACGTTTT
NONE
Os.49300.1.S1_at--1014--4791Chr02:6536313..6536337 (25 bp)
GCTCACGTTTTACTTGTTCAGGCAG
NONE
Os.49300.1.S1_at--672--5591Chr02:6536160..6536184 (25 bp)
GAAATACTCAGTTCAGTGCCAAAGC
NONE
Os.49300.1.S1_at--705--3291Chr02:6536119..6536143 (25 bp)
CAAAGTTATCATACTGCCAGAGGTC
NONE
Os.49300.1.S1_at--998--3271Chr02:6536016..6536040 (25 bp)
CAAAATGTCGTCTTCTTTGTAGAAC
NONE
Os.49300.1.S1_at--465--371Chr02:6535970..6535994 (25 bp)
ATCAAAACCTGGGACGTCTGACCTT
NONE
Target Sequence 
AGTGGCTTTTCCTGACAATTTTTCACACTTTTAGCATCCAAAACTGATTGTTGTCTCAAACAAAGTATCCTTTGAGAATC
CAAAGGCACCCGTCTACTCTCCGTTACAGCAAAGGAGATCCTAGAATGAAGTGAGCCCAATCTCCTTTCTTATTTACCAA
TGGAAGTGGACATGTTAATTGTTTAAATCGGTCATTTAGCTCACGTTTTACTTGTTCAGGCAGAAATAGATGGTCCTGAC
ATGTATGGAAACTATGAGCTATTTCTGCATGAACAAGTCAAACATGAGCTAAAGGAGTGAACTAAGCAATTAATTCTTTT
AGGTAACACATATATCTGTTTGGGAAACAAAGAAATACTCAGTTCAGTGCCAAAGCAAATACAAGTCCATATCAAAGTTA
TCATACTGCCAGAGGTCTAAAGATGAAACCTTTTTTTCCTAACAAATTAGAAAATAGAGCATATGATGTCCAGAAATACC
TGCAAATGTGATCAACAAAATGTCGTCTTCTTTGTAGAACTTAAAATTTTGGAAGCTTTTAATCAAAACCTGGGACGTCT
GACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis