Browse Element(s) Details


OsAffx.20014.1.S1_at

Description tigr:9640.m03774
TID=OsAffx.20014.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=diphosphonucleotide phosphatase 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3877011/11diphosphonucleotide phosphatase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38730Os.19448.1.S1_at11/1112+23760790..23764405expressed protein
LOC_Os12g38740OsAffx.22684.1.S1_at1/1112+23767656..23770018retrotransposon protein, putative, unclassified
LOC_Os12g38750Os.49226.1.S1_at11/1112+23771605..23775312diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38760Os.8256.1.S1_at10/1112+23776983..23780816diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38770OsAffx.20014.1.S1_at11/1112+23785749..23788794diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38770Os.49300.1.S1_at1/1112+23785749..23788794diphosphonucleotide phosphatase 1, putative, expressed
LOC_Os12g38780Os.53835.1.S1_at9/1112+23790291..23795978Diacylglycerol kinase 1, putative, expressed
LOC_Os12g38790OsAffx.7832.1.S1_at10/1112+23798169..23800677Targeting protein for Xklp2 containing protein, expressed
LOC_Os12g38800Os.50914.1.S1_at11/1112+23808301..23811671RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20014.1.S1_at--1016--7671Chr12:23786381..23786405 (25 bp)
GGGTTCTTGGATACTCATCTGCGAG
LOC_Os12g38770
OsAffx.20014.1.S1_at--426--6251Chr12:23786310..23786334 (25 bp)
GATGGTCTCGAGGAACTCTGGCAGA
LOC_Os12g38770
OsAffx.20014.1.S1_at--681--9831Chr12:23786283..23786307 (25 bp)
TACAAGGTTGATCTCGCAGTTTTCG
LOC_Os12g38770
OsAffx.20014.1.S1_at--469--5031Chr12:23786268..23786292 (25 bp)
GCAGTTTTCGGTCATATACACAGCT
LOC_Os12g38770
OsAffx.20014.1.S1_at--979--2051Chr12:23786048..23786259 (25 bp)
ACTTGCCCCATTTATCAGAACCGAT
LOC_Os12g38770
OsAffx.20014.1.S1_at--1112--2611Chr12:23786030..23786054 (25 bp)
AACCGATGTGTCCAGGATGGCTCAA
LOC_Os12g38770
OsAffx.20014.1.S1_at--260--851Chr12:23786014..23786038 (25 bp)
ATGGCTCAAACCTTTACACCGGTCA
LOC_Os12g38770
OsAffx.20014.1.S1_at--909--1371Chr12:23785931..23785955 (25 bp)
AGAGCCACTGTACCCTATTGGAGCT
LOC_Os12g38770
OsAffx.20014.1.S1_at--274--10811Chr12:23785914..23785938 (25 bp)
TTGGAGCTTCTTCAGGGACTACGAC
LOC_Os12g38770
OsAffx.20014.1.S1_at--359--9951Chr12:23785895..23785919 (25 bp)
TACGACTTTGGGTTCTCGAAGCTCA
LOC_Os12g38770
OsAffx.20014.1.S1_at--299--3751Chr12:23785857..23785881 (25 bp)
CTCTACGCTTCTGTTCGAGTACAAG
LOC_Os12g38770
Target Sequence 
GGGTTCTTGGATACTCATCTGCGAGTTGGTATGAGATCATGATGGGATCATATGGTGAACCAATGGGCCGAGATGGTCTC
GAGGAACTCTGGCAGAAGTACAAGGTTGATCTCGCAGTTTTCGGTCATATACACAGCTATGAGCGCACTTGCCCCATTTA
TCAGAACCGATGTGTCCAGGATGGCTCAAACCTTTACACCGGTCAATTCAATGCGACTACTCATGTAATTGTGGGAGGAG
GCGGCGCGATGCTCTCTCCCTTCAGAGCCACTGTACCCTATTGGAGCTTCTTCAGGGACTACGACTTTGGGTTCTCGAAG
CTCACTGCACTCAACCACTCTACGCTTCTGTTCGAGTACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis