Browse Element(s) Details


Os.19075.1.S1_at

Description gb:AK071485.1
DB_XREF= gi:32981508
TID=Os.19075.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023095G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023095G02, full insert sequence.
FL= gb:AK071485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3918010/11Metal transporter Nramp2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39170OsAffx.20023.1.S1_at10/1112+24075037..24081156Serine carboxypeptidase family protein
LOC_Os12g39170Os.20341.1.S1_s_at1/1112+24075037..24081156Serine carboxypeptidase family protein
LOC_Os12g39180Os.19075.1.S1_at10/1112+24086315..24090178Metal transporter Nramp2, putative, expressed
LOC_Os12g39190NANA12+24097238..24101056retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39200Os.9137.1.S1_at11/1112+24104229..24108313seed maturation protein PM23, putative, expressed
LOC_Os12g39210Os.57113.1.S1_at11/1112+24109067..24111268G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os12g39220Os.35718.1.S1_at11/1112+24111988..24113008Zinc finger protein 7, putative, expressed
LOC_Os12g39230OsAffx.7835.1.S1_at10/1112+24114593..24116967hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006828biological_processmanganese ion transport
GO:0006875biological_processmetal ion homeostasis
GO:0015691biological_processcadmium ion transport
GO:0015692biological_processlead ion transport
GO:0030001biological_processmetal ion transport
GO:0005384molecular_functionmanganese ion transporter activity
GO:0015103molecular_functioninorganic anion transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19075.1.S1_at--551--6571Chr12:24087333..24087357 (25 bp)
GATTCCGCTGATAACTTTGGTTTCC
LOC_Os12g39180
Os.19075.1.S1_at--864--5591NONE
GAAATACTCAAGCTGTGACCTGGAC
NONE
Os.19075.1.S1_at--256--8691Chr12:24086744..24086768 (25 bp)
TGTGACCTGGACAGTGGCGACACTA
LOC_Os12g39180
Os.19075.1.S1_at--390--7551Chr12:24086731..24086755 (25 bp)
GTGGCGACACTATTGATCACGATCA
LOC_Os12g39180
Os.19075.1.S1_at--1112--6451Chr12:24086711..24086735 (25 bp)
GATCAATGGCTATCTCTTGCTGGAT
LOC_Os12g39180
Os.19075.1.S1_at--338--10211Chr12:24086661..24086685 (25 bp)
TATTATCTGGCTCAATTCTCTGCGT
LOC_Os12g39180
Os.19075.1.S1_at--679--3631Chr12:24086629..24086653 (25 bp)
CTTGCTTATGCTTCTTTTGTATTGT
LOC_Os12g39180
Os.19075.1.S1_at--1034--10251Chr12:24086614..24086638 (25 bp)
TTTGTATTGTATCTCATCCTGCGGG
LOC_Os12g39180
Os.19075.1.S1_at--3--7691Chr12:24086591..24086615 (25 bp)
GGGTACCGAGCTGCCAAATCAGATC
LOC_Os12g39180
Os.19075.1.S1_at--507--211Chr12:24086378..24086402 (25 bp)
ATTTGTTGTAACACCCTGACTGTGT
LOC_Os12g39180
Os.19075.1.S1_at--875--3851Chr12:24086363..24086387 (25 bp)
CTGACTGTGTCGTCCTGAAGCAAAG
LOC_Os12g39180
Target Sequence 
GATTCCGCTGATAACTTTGGTTTCCAAGGAGAAAGTTATGGGGGTATTTAAAATAGGTCGAAATACTCAAGCTGTGACCT
GGACAGTGGCGACACTATTGATCACGATCAATGGCTATCTCTTGCTGGATTTCTTCTCTTCAGAAATAAGAGGCCTATTA
TCTGGCTCAATTCTCTGCGTGNGCAGTACTTGCTTATGCTTCTTTTGTATTGTATCTCATCCTGCGGGGTACCGAGCTGC
CAAATCAGATCATCACAACTATACGCAAGAGTTTTTCATGACAAAGATAACCNAAATTTGGCCGTTTTAAACACCATCAT
AACATCTCAAACGTATAGAGAAATATGGACTTGGGGATTGGAGGAGATACTCACTGTACAGTGACTTCCAAAAGGGTTAG
CTGTTTGAGAAGAAGTGCAACTGATGTAATCTTCATTTCATTTGTTGTAACACCCTGACTGTGTCGTCCTGAAGCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis