Browse Element(s) Details


Os.35718.1.S1_at

Description gb:AK066117.1
DB_XREF= gi:32976135
TID=Os.35718.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35718 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013056L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056L24, full insert sequence.
FL= gb:AK066117.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3922011/11Zinc finger protein 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39180Os.19075.1.S1_at10/1112+24086315..24090178Metal transporter Nramp2, putative, expressed
LOC_Os12g39190NANA12+24097238..24101056retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39200Os.9137.1.S1_at11/1112+24104229..24108313seed maturation protein PM23, putative, expressed
LOC_Os12g39210Os.57113.1.S1_at11/1112+24109067..24111268G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os12g39220Os.35718.1.S1_at11/1112+24111988..24113008Zinc finger protein 7, putative, expressed
LOC_Os12g39230OsAffx.7835.1.S1_at10/1112+24114593..24116967hypothetical protein
LOC_Os12g39240OsAffx.20024.1.S1_x_at11/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39240OsAffx.20024.1.S1_at11/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39240OsAffx.28081.1.S1_x_at1/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39250OsAffx.32091.1.S1_at8/1112+24126935..24127811hypothetical protein
LOC_Os12g39260NANA12+24129827..24134840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39270NANA12+24135400..24137958hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35718.1.S1_at--779--1251Chr12:24112499..24112523 (25 bp)
AGATCAGGACAGCACCAAGGTTTCA
LOC_Os12g39220
Os.35718.1.S1_at--773--3211Chr12:24112484..24112508 (25 bp)
CAAGGTTTCATGAAGGCAGCATCAG
LOC_Os12g39220
Os.35718.1.S1_at--491--4711Chr12:24112460..24112484 (25 bp)
GCTGGCCACCGATTGCTTATGAGGA
LOC_Os12g39220
Os.35718.1.S1_at--448--6151Chr12:24112437..24112461 (25 bp)
GAGGTGCCGAATTCGACATGGCCAG
LOC_Os12g39220
Os.35718.1.S1_at--609--2111Chr12:24112422..24112446 (25 bp)
ACATGGCCAGGGAGCTTCAGATTGA
LOC_Os12g39220
Os.35718.1.S1_at--408--6031Chr12:24112399..24112423 (25 bp)
GAGATCACAGCCTTCAGACCAACCA
LOC_Os12g39220
Os.35718.1.S1_at--700--6491Chr12:24112360..24112384 (25 bp)
GATAGACTTAAATCTCAGGCTTTGA
LOC_Os12g39220
Os.35718.1.S1_at--462--9871Chr12:24112310..24112334 (25 bp)
TACATAAGTCCCTCCTCAAGCTTGT
LOC_Os12g39220
Os.35718.1.S1_at--90--291Chr12:24112255..24112279 (25 bp)
ATAGGTTCAGCTCACCATCAGATCA
LOC_Os12g39220
Os.35718.1.S1_at--661--3571Chr12:24112226..24112250 (25 bp)
CATATGGTGGTACTGAACTTCGAAG
LOC_Os12g39220
Os.35718.1.S1_at--526--5231Chr12:24112045..24112069 (25 bp)
GAATATATCCCGTCTTTATCAGTAA
LOC_Os12g39220
Target Sequence 
AGATCAGGACAGCACCAAGGTTTCATGAAGGCAGCATCAGCTGGCCACCGATTGCTTATGAGGAGGTGCCGAATTCGACA
TGGCCAGGGAGCTTCAGATTGAGATCACAGCCTTCAGACCAACCATCAGAACAGAGTAAGATAGACTTAAATCTCAGGCT
TTGATAGGTTGATGTACAACTCTGACCAGTACATAAGTCCCTCCTCAAGCTTGTCCTTCTGAATAAATGAGTTTGAAGTA
ATCAATAGGTTCAGCTCACCATCAGATCAAAATCATATGGTGGTACTGAACTTCGAAGGTATTNGTTGTTCATTTGGAAT
TCTTGGCAGAATTATTGAAAAAAAAATTCAGAGACAAGTTACTGCACTAATTTTATAGCTAGAAACTTATTAGCATGATC
ATAGTTGATTCAACTGTGAAGAAAGACATGCATTCCGCAGCAATTNTTACACGAAGAATATATCCCGTCTTTATCAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis