Browse Element(s) Details


OsAffx.7835.1.S1_at

Description tigr:9640.m03824
TID=OsAffx.7835.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3923010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39180Os.19075.1.S1_at10/1112+24086315..24090178Metal transporter Nramp2, putative, expressed
LOC_Os12g39190NANA12+24097238..24101056retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39200Os.9137.1.S1_at11/1112+24104229..24108313seed maturation protein PM23, putative, expressed
LOC_Os12g39210Os.57113.1.S1_at11/1112+24109067..24111268G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os12g39220Os.35718.1.S1_at11/1112+24111988..24113008Zinc finger protein 7, putative, expressed
LOC_Os12g39230OsAffx.7835.1.S1_at10/1112+24114593..24116967hypothetical protein
LOC_Os12g39240OsAffx.20024.1.S1_x_at11/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39240OsAffx.20024.1.S1_at11/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39240OsAffx.28081.1.S1_x_at1/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39250OsAffx.32091.1.S1_at8/1112+24126935..24127811hypothetical protein
LOC_Os12g39260NANA12+24129827..24134840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39270NANA12+24135400..24137958hypothetical protein
LOC_Os12g39280OsAffx.17637.1.S1_at5/1112+24141946..24142320hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7835.1.S1_at--23--4511Chr12:24116901..24116925 (25 bp)
GCCGTTCTGTTCTTGGTGGTTGCCA
LOC_Os12g39230
OsAffx.7835.1.S1_at--138--8091NONE
GGACGTCCTCGGTATGTGAGTTTTT
NONE
OsAffx.7835.1.S1_at--677--6071Chr12:24115658..24115682 (25 bp)
GAGTTTTTTCAAGGCAGTCATCAGT
LOC_Os12g39230
OsAffx.7835.1.S1_at--518--8271Chr12:24115282..24115670 (25 bp)
GGCAGTCATCAGTATATCCTTGAGA
LOC_Os12g39230
OsAffx.7835.1.S1_at--471--10771Chr12:24115263..24115287 (25 bp)
TTGAGAATCCCAACAACTGCACCTT
LOC_Os12g39230
OsAffx.7835.1.S1_at--148--6511Chr12:24114824..24114848 (25 bp)
GATATGTATGACTAATCCTCCTCAT
LOC_Os12g39230
OsAffx.7835.1.S1_at--600--3031Chr12:24114811..24114835 (25 bp)
AATCCTCCTCATTTACTAACTGTTG
LOC_Os12g39230
OsAffx.7835.1.S1_at--361--7871Chr12:24114779..24114803 (25 bp)
GGTTTGCTCATTTATCACATGGGAT
LOC_Os12g39230
OsAffx.7835.1.S1_at--63--8011Chr12:24114758..24114782 (25 bp)
GGATGGATACCAGTACATGTCTAAT
LOC_Os12g39230
OsAffx.7835.1.S1_at--612--5972Chr12:24114725..24114749 (25 bp)
GAGAACTAATGCAGTTGCCCTCCCT
LOC_Os12g39230
OsAffx.7835.1.S1_at--28--1232Chr12:24114714..24114737 (24 bp)
AGTTGCCCTCCCTCTGAAGAAAGGA
LOC_Os12g39230
Target Sequence 
GCCGTTCTGTTCTTGGTGGTTGCCATCCTTCCTCGGACGAGGAGGCGTGATGGCGACGCAGCGCCGAGCCAGCCGGTGCT
CGGCCACCTCCACCTGCTCAAGAGGCCGCCGCTGCACCGCTCGCCGCGCCGCCGCGGCCAGGGCGCCGCTGGTGTCGCTG
CGGCTGGGCCGCGCGGCGGGCGCTGCTCGCGTCGACGCACGCCGCGGCGCGGGGGAGCGCTTCACGGCGTGCGACGCCGC
GATGGCGGGGAGGCCCCCGGCTGCTCGCCGTGGACGTCCTCGGTATGTGAGTTTTTTCAAGGCAGTCATCAGTATATCCT
TGAGAATCCCAACAACTGCACCTTCGAGGAGGAGAGGGAAAAATCCCAGAGAAGAAATTTTATTTACCTTTTGGACAAGG
GGATATGTATGACTAATCCTCCTCATTTACTAACTGTTGTGAAAAAGGTTTGCTCATTTATCACATGGGATGGATACCAG
TACATGTCTAATCAGTTTGGGAGAACTAATGCAGTTGCCCTCCCTCTGAAGAAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis