Browse Element(s) Details


Os.19165.1.S1_at

Description gb:AK068341.1
DB_XREF= gi:32978359
TID=Os.19165.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.19165 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149K10, full insert sequence.
FL= gb:AK068341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2990011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29870Os.55827.1.S1_at11/1111+16849519..16853091WRKY DNA binding domain containing protein, expressed
LOC_Os11g29880Os.1709.1.S1_x_at3/1111+16854398..16860260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29890NANA11+16860802..16864298hypothetical protein
LOC_Os11g29900Os.19165.1.S1_at11/1111+16877037..16880186expressed protein
LOC_Os11g29910OsAffx.7252.1.S1_at11/1111+16881166..16881880Plastocyanin-like domain containing protein
LOC_Os11g29920OsAffx.31213.1.S1_x_at11/1111+16882575..16890973NB-ARC domain containing protein, expressed
LOC_Os11g29920OsAffx.31213.3.S1_s_at6/1111+16882575..16890973NB-ARC domain containing protein, expressed
LOC_Os11g29930OsAffx.19075.1.S1_x_at11/1111+16892140..16892436hypothetical protein
LOC_Os11g29930OsAffx.19075.1.S1_at11/1111+16892140..16892436hypothetical protein
LOC_Os11g29940OsAffx.19076.1.S1_at10/1111+16897034..16899228hypothetical protein
LOC_Os11g29940Os.51841.1.S1_x_at1/1111+16897034..16899228hypothetical protein
LOC_Os11g29950OsAffx.8923.1.S1_at9/1111+16902731..16904701retrotransposon protein, putative, unclassified
LOC_Os11g29960Os.51887.1.S1_x_at1/1111+16905146..16908244retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19165.1.S1_at--344--5371Chr11:16879620..16879644 (25 bp)
GAAGACCGATCTGGAGACTGAACAT
LOC_Os11g29900
Os.19165.1.S1_at--309--5731Chr11:16879635..16879659 (25 bp)
GACTGAACATAGTCAGGCTGCCTTG
LOC_Os11g29900
Os.19165.1.S1_at--481--8331Chr11:16879650..16879674 (25 bp)
GGCTGCCTTGAATATACTAACATTT
LOC_Os11g29900
Os.19165.1.S1_at--258--5271Chr11:16879703..16879727 (25 bp)
GAATGTTAATTATCGAAGTGCCTAG
LOC_Os11g29900
Os.19165.1.S1_at--444--2851Chr11:16879718..16879742 (25 bp)
AAGTGCCTAGTTCAAGTTTCCAGAG
LOC_Os11g29900
Os.19165.1.S1_at--1036--7611Chr11:16879742..16879766 (25 bp)
GGGAACTTGAGCCTTATCTCTAGCT
LOC_Os11g29900
Os.19165.1.S1_at--155--10011Chr11:16879762..16879786 (25 bp)
TAGCTCACAAGCACAGCTGCCGATC
LOC_Os11g29900
Os.19165.1.S1_at--1023--9171Chr11:16879779..16879803 (25 bp)
TGCCGATCACAAATGCTCTTCTTGA
LOC_Os11g29900
Os.19165.1.S1_at--549--4811Chr11:16879793..16879817 (25 bp)
GCTCTTCTTGAATCGTAAGCATTTC
LOC_Os11g29900
Os.19165.1.S1_at--305--10551Chr11:16879815..16879839 (25 bp)
TTCTTTAAGGGTTCAACTCGGATAT
LOC_Os11g29900
Os.19165.1.S1_at--526--8271Chr11:16879900..16879924 (25 bp)
GGCAGTGTGGCCTATATCAACATTC
LOC_Os11g29900
Target Sequence 
GAAGACCGATCTGGAGACTGAACATAGTCAGGCTGCCTTGAATATACTAACATTTATATAGCGGCTATACAGTATCATGA
TCTGAATGTTAATTATCGAAGTGCCTAGTTCAAGTTTCCAGAGGGAACTTGAGCCTTATCTCTAGCTCACAAGCACAGCT
GCCGATCACAAATGCTCTTCTTGAATCGTAAGCATTTCTTTAAGGGTTCAACTCGGATATGAATTTTTCATCTGAAGTAT
ACCGAAACTTCACTGANNTTTCACATCACAGGCATGGAGATTGGCAGTGTGGCCTATATCAACATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis