Browse Element(s) Details


OsAffx.7252.1.S1_at

Description tigr:9639.m02705
TID=OsAffx.7252.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plastocyanin-like domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2991011/11Plastocyanin-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29880Os.1709.1.S1_x_at3/1111+16854398..16860260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29890NANA11+16860802..16864298hypothetical protein
LOC_Os11g29900Os.19165.1.S1_at11/1111+16877037..16880186expressed protein
LOC_Os11g29910OsAffx.7252.1.S1_at11/1111+16881166..16881880Plastocyanin-like domain containing protein
LOC_Os11g29920OsAffx.31213.1.S1_x_at11/1111+16882575..16890973NB-ARC domain containing protein, expressed
LOC_Os11g29920OsAffx.31213.3.S1_s_at6/1111+16882575..16890973NB-ARC domain containing protein, expressed
LOC_Os11g29930OsAffx.19075.1.S1_x_at11/1111+16892140..16892436hypothetical protein
LOC_Os11g29930OsAffx.19075.1.S1_at11/1111+16892140..16892436hypothetical protein
LOC_Os11g29940OsAffx.19076.1.S1_at10/1111+16897034..16899228hypothetical protein
LOC_Os11g29940Os.51841.1.S1_x_at1/1111+16897034..16899228hypothetical protein
LOC_Os11g29950OsAffx.8923.1.S1_at9/1111+16902731..16904701retrotransposon protein, putative, unclassified
LOC_Os11g29960Os.51887.1.S1_x_at1/1111+16905146..16908244retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7252.1.S1_at--1124--1151Chr11:16881204..16881228 (25 bp)
AGTACAACTTGCTGCCGTTTTCAGC
LOC_Os11g29910
OsAffx.7252.1.S1_at--731--4031Chr11:16881219..16881243 (25 bp)
CGTTTTCAGCATGGCTTCGGCGACT
LOC_Os11g29910
OsAffx.7252.1.S1_at--866--1991Chr11:16881241..16881265 (25 bp)
ACTCCGGCTCCGAGCAATGCGACGG
LOC_Os11g29910
OsAffx.7252.1.S1_at--726--1691Chr11:16881274..16881298 (25 bp)
AGCCATGGCCGGAACACGACGGCGC
LOC_Os11g29910
OsAffx.7252.1.S1_at--904--8331Chr11:16881343..16881367 (25 bp)
GGCTGGTTCTTTGACGGCAATGCGA
LOC_Os11g29910
OsAffx.7252.1.S1_at--633--10271Chr11:16881352..16881376 (25 bp)
TTTGACGGCAATGCGAATGCTTCGG
LOC_Os11g29910
OsAffx.7252.1.S1_at--296--611Chr11:16881362..16881386 (25 bp)
ATGCGAATGCTTCGGTCGCCAACTA
LOC_Os11g29910
OsAffx.7252.1.S1_at--254--1211Chr11:16881510..16881533 (24 bp)
AGTTTCAGCACCAACACGGATAACA
LOC_Os11g29910
OsAffx.7252.1.S1_at--310--2171Chr11:16881522..16881546 (25 bp)
ACACGGATAACACGGTGGTGCACAC
LOC_Os11g29910
OsAffx.7252.1.S1_at--899--891Chr11:16881633..16881657 (25 bp)
AGGCGTTCTTGACGGTGATGCTGAC
LOC_Os11g29910
OsAffx.7252.1.S1_at--180--7291Chr11:16881764..16881788 (25 bp)
GTGCCGGCGTCGTACTACGAGCCGC
LOC_Os11g29910
Target Sequence 
AGTACAACTTGCTGCCGTTTTCAGCATGGCTTCGGCGACTCCGGCTCCGAGCAATGCGACGGCGACGACCAGCCATGGCC
GGAACACGACGGCGCCGCCGCCGCCGTTCGGTGCCAACCACACCGTCGGCGAGGGCGCCGGCTGGTTCTTTGACGGCAAT
GCGAATGCTTCGGTCGCCAACTACTCCGCTTGGGCTGCCAACCGCACCTTCTACCTCGGCGACTACCTCAGTTTCAGCAC
CAACACGGATAACACGGTGGTGCACACCACCAACGCCACCGTCTACAAGCTCTGCGGCGATGGCGGCGCGGCGGCGGCGG
CCGGATGCAGCGGCGGCGGGTGGAAGACGGAGGAGGCGTTCTTGACGGTGATGCTGACGGCGGAGGGCGCCAACTACTTC
TTCTCCGACGCCGGGGGAGGCGAGCATTGCCGGAAGGGGATGCGGTTCGAGCTCGCCGTCGCGCGCGGCCGCGGCCTCCC
GCCGGTGCCGGCGTCGTACTACGAGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis