Browse Element(s) Details


Os.19300.1.S1_at

Description gb:AK064998.1
DB_XREF= gi:32975016
TID=Os.19300.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001D24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001D24, full insert sequence.
FL= gb:AK064998.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4797010/11ORMDL family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47920OsAffx.4118.1.S1_at11/114+28278967..28279242hypothetical protein
LOC_Os04g47930Os.56757.1.S1_at9/114+28280903..28283389Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os04g47940NANA4+28287793..28288194transposon protein, putative, unclassified
LOC_Os04g47950OsAffx.14321.1.S1_at11/114+28295409..28297032hypothetical protein
LOC_Os04g47960OsAffx.4119.1.S1_at10/114+28299184..28300682hypothetical protein
LOC_Os04g47970OsAffx.26512.1.S1_at11/114+28302787..28306558ORMDL family protein, expressed
LOC_Os04g47970Os.19300.1.S1_at10/114+28302787..28306558ORMDL family protein, expressed
LOC_Os04g47990Os.4182.2.S1_x_at11/114+28315203..28318450dof zinc finger protein, putative, expressed
LOC_Os04g47990Os.4182.1.S1_at11/114+28315203..28318450dof zinc finger protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19300.1.S1_at--504--7891NONE
GGTTCCTTTGGTCCTATACTTGATA
NONE
Os.19300.1.S1_at--135--6491Chr04:28306081..28306105 (25 bp)
GATAGCCTTGCACACGACAGATTAT
LOC_Os04g47970
Os.19300.1.S1_at--959--2471Chr04:28306127..28306151 (25 bp)
AACACCATTGCAGTTGTTGTGCTGG
LOC_Os04g47970
Os.19300.1.S1_at--134--7171Chr04:28306145..28306169 (25 bp)
GTGCTGGTTGTTGCAAAACTACCGA
LOC_Os04g47970
Os.19300.1.S1_at--758--3071Chr04:28306195..28306219 (25 bp)
AATCAATGCTGGCAACTAGGCGGCA
LOC_Os04g47970
Os.19300.1.S1_at--769--1531Chr04:28306219..28306243 (25 bp)
AGCATCCCACGGTTTGTTATCACTA
LOC_Os04g47970
Os.19300.1.S1_at--327--8791Chr04:28306233..28306257 (25 bp)
TGTTATCACTACCATGCTTCATTTG
LOC_Os04g47970
Os.19300.1.S1_at--22--5511Chr04:28306389..28306413 (25 bp)
GAACACACTTCTTTAGGCTCTTATC
LOC_Os04g47970
Os.19300.1.S1_at--762--10311Chr04:28306400..28306424 (25 bp)
TTTAGGCTCTTATCCCACCAAAAAG
LOC_Os04g47970
Os.19300.1.S1_at--1112--4811Chr04:28306460..28306484 (25 bp)
GCTCTTGTTCAAGTGTATGTCACAT
LOC_Os04g47970
Os.19300.1.S1_at--314--7091Chr04:28306478..28306502 (25 bp)
GTCACATGTGTGTCTTATGGAGAAT
LOC_Os04g47970
Target Sequence 
GGTTCCTTTGGTCCTATACTTGATAGCCTTGCACACGACAGATTATCAACATCCTATGNCTCTTCCTCAACACCATTGCA
GTTGTTGTGCTGGTTGTTGCAAAACTACCGAACATGCACAAGGTCCGGATCTTTGGAATCAATGCTGGCAACTAGGCGGC
AGCATCCCACGGTTTGTTATCACTACCATGCTTCATTTGAGTGGCAGGAAACAGTATACCTAGTTNTGAATGGATAACCA
GAGTGAGTAGTTTTTAAGAGCTGTTAGTAGATGACATGTAATCATTGTACAGAGCTAAAGGCATGGAAATGATGTTGTTC
AGCATCTAGTGAACACACTTCTTTAGGCTCTTATCCCACCAAAAAGAAACTTTATTTTGCTGTTAATGTTGTTATATATG
TGCTCTTGTTCAAGTGTATGTCACATGTGTGTCTTATGGAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis