Browse Element(s) Details


Os.19371.1.S1_at

Description gb:AK107126.1
DB_XREF= gi:32992335
TID=Os.19371.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B11, full insert sequence.
FL= gb:AK107126.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2958011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29540OsAffx.31928.1.S1_at11/1112+17601949..17603971hypothetical protein
LOC_Os12g29550Os.5901.1.S1_at11/1112+17606379..17612543expressed protein
LOC_Os12g29560Os.14424.1.S1_at11/1112+17613382..17617948DHHC zinc finger domain containing protein, expressed
LOC_Os12g29570Os.22484.1.A1_at11/1112+17618456..17619268one helix protein, putative, expressed
LOC_Os12g29570OsAffx.27590.1.S1_at1/1112+17618456..17619268one helix protein, putative, expressed
LOC_Os12g29580Os.19371.1.S1_at11/1112+17622105..17626347protein kinase, putative, expressed
LOC_Os12g29590OsAffx.7737.1.S1_at10/1112+17649594..17650435hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19371.1.S1_at--1136--10231Chr12:17622658..17622682 (25 bp)
TTTGGCGTCTTCCTTTATGAACTGT
LOC_Os12g29580
Os.19371.1.S1_at--157--5491Chr12:17622623..17622647 (25 bp)
GACACCTTTCAGAGGTCCTGGGAAT
LOC_Os12g29580
Os.19371.1.S1_at--531--3611Chr12:17622591..17622615 (25 bp)
CATTGGCAAATGTGGTTTCGCAGAA
LOC_Os12g29580
Os.19371.1.S1_at--535--571Chr12:17622549..17622573 (25 bp)
ATCCATCTGTCAGCAGTAATGCCAA
LOC_Os12g29580
Os.19371.1.S1_at--707--1491Chr12:17622450..17622474 (25 bp)
AGCAACACCCTTTCTTTGAAGGCTT
LOC_Os12g29580
Os.19371.1.S1_at--721--3151Chr12:17622424..17622448 (25 bp)
AATTGGGCCTTGATACGATCTGCCG
LOC_Os12g29580
Os.19371.1.S1_at--142--5991Chr12:17622391..17622415 (25 bp)
GAGACGCGACCCTGTGACGTTGTGA
LOC_Os12g29580
Os.19371.1.S1_at--501--9871Chr12:17622267..17622291 (25 bp)
TACAGTTTAGCACTCTTCTGCCAAA
LOC_Os12g29580
Os.19371.1.S1_at--952--10011Chr12:17622242..17622266 (25 bp)
TAGAGTCTACATTTTTCTTTTGGGT
LOC_Os12g29580
Os.19371.1.S1_at--696--3891Chr12:17622175..17622199 (25 bp)
CTGGTTACTGCTATGTACCTGTTAA
LOC_Os12g29580
Os.19371.1.S1_at--1023--5411Chr12:17622117..17622141 (25 bp)
GAAGCCATCTGTTGCATAAGGATCA
LOC_Os12g29580
Target Sequence 
TTTGGCGTCTTCCTTTATGAACTGTTGTACGGTAAGACACCTTTCAGAGGTCCTGGGAATGNTGAAACATTGGCAAATGT
GGTTTCGCAGAATCTCAAGTTCCCAGAAAATCCATCTGTCAGCAGTAATGCCAAAGATCTTATCAAAGGTTTGCTAGTGA
AGGAGCCAGAGAACAGACTTGGNTCATTGAGAGGAGCAGCTGAAATCAAGCAACACCCTTTCTTTGAAGGCTTAAATTGG
GCCTTGATACGATCTGCCGCTCCTCCAGAGACGCGACCCTGTGACGTTGTGACCCTCNCGACAGCGAAGAAGAAGAAAGN
AGGCAAGTGCCTGGAGTTCAGGAGTAACTCTGAGGACCTGGAATTTGAAGTTTTTTAGCAAGTGTCTTTGGTACAGTTTA
GCACTCTTCTGCCAAATAGAGTCTACATTTTTCTTTTGGGTAGCCAAAGGCTGGGGGTGTACATTGTACAAGTAGATGTA
TNTCTGGTTACTGCTATGTACCTGTTAATAGATCACTAAATTCAAAGGAATGATGGANGTTGAAGCCATCTGTTGCATAA
GGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis