Browse Element(s) Details


Os.5901.1.S1_at

Description gb:AK120970.1
DB_XREF= gi:37990593
TID=Os.5901.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041A13, full insert sequence.
FL= gb:AK120970.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2955011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29530Os.41695.15.S1_s_at11/1112+17583182..17590737transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g29530Os.41695.2.S1_x_at9/1112+17583182..17590737transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g29530Os.41695.5.S1_x_at9/1112+17583182..17590737transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g29530Os.41695.3.S1_x_at8/1112+17583182..17590737transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g29530Os.41695.4.S1_x_at1/1112+17583182..17590737transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g29540OsAffx.31928.1.S1_at11/1112+17601949..17603971hypothetical protein
LOC_Os12g29550Os.5901.1.S1_at11/1112+17606379..17612543expressed protein
LOC_Os12g29560Os.14424.1.S1_at11/1112+17613382..17617948DHHC zinc finger domain containing protein, expressed
LOC_Os12g29570Os.22484.1.A1_at11/1112+17618456..17619268one helix protein, putative, expressed
LOC_Os12g29570OsAffx.27590.1.S1_at1/1112+17618456..17619268one helix protein, putative, expressed
LOC_Os12g29580Os.19371.1.S1_at11/1112+17622105..17626347protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5901.1.S1_at--464--8291Chr12:17610757..17610777 (21 bp)
GGCTTGGTATCGTTCATCGGGACTC
LOC_Os12g29550
Os.5901.1.S1_at--492--6611Chr12:17612122..17612146 (25 bp)
GATTGGAAGGATTGTCTGTGTCTCA
LOC_Os12g29550
Os.5901.1.S1_at--892--7171Chr12:17612135..17612159 (25 bp)
GTCTGTGTCTCATTGAAGCGTGCAA
LOC_Os12g29550
Os.5901.1.S1_at--1162--6811Chr12:17612228..17612252 (25 bp)
GTTTCACGATGGACAGCTGGACTGG
LOC_Os12g29550
Os.5901.1.S1_at--809--651Chr12:17612254..17612278 (25 bp)
ATGCACTCCTCATCTTTCTGTAAAT
LOC_Os12g29550
Os.5901.1.S1_at--410--10591Chr12:17612269..17612293 (25 bp)
TTCTGTAAATTACGCTGCCATGACG
LOC_Os12g29550
Os.5901.1.S1_at--646--4331Chr12:17612286..17612310 (25 bp)
CCATGACGGACTTGTTCATCCTGAA
LOC_Os12g29550
Os.5901.1.S1_at--778--3451Chr12:17612313..17612337 (25 bp)
CAGTCCTTCATGTTTTGTTGGCAAA
LOC_Os12g29550
Os.5901.1.S1_at--498--1951Chr12:17612467..17612491 (25 bp)
ACTGTACAAAAACCCTCATACCTGC
LOC_Os12g29550
Os.5901.1.S1_at--540--9911Chr12:17612504..17612528 (25 bp)
TACTGGCAGGTTTACGAGTCCACTG
LOC_Os12g29550
Os.5901.1.S1_at--473--6111Chr12:17612519..17612543 (25 bp)
GAGTCCACTGTTGCTTGCTTCCTTT
LOC_Os12g29550
Target Sequence 
GGCTTGGTATCGTTCATCGGGACTCGATTGGAAGGATTGTCTGTGTCTCATTGAAGCGTGCAAATGAGATATTAGGCAAC
ACTACTGAAGAATTGGTGATGCGAGCGCAACAGAGCCCANCTGCTTNTTAAGTTTCACGATGGACAGCTGGACTGGAATG
CACTCCTCATCTTTCTGTAAATTACGCTGCCATGACGGACTTGTTCATCCTGAAAACAGTCCTTCATGTTTTGTTGGCAA
ATGTGCCATACGTGCTNTGCACTATAGTTAGGCTTCCTTTTATTTTCGGCGAGTTTTAATGTGTAACTATGTTATGCTTC
AGTTTAAAATGGGTACGGGTGATTTGTACATAACACGTGTAATAAAAACAACTGTACAAAAACCCTCATACCTGCCTTGG
TTCTTTTTACTGGCAGGTTTACGAGTCCACTGTTGCTTGCTTCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis