Browse Element(s) Details


OsAffx.31928.1.S1_at

Description tigr:9640.m02845
TID=OsAffx.31928.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2954011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29530Os.41695.15.S1_s_at11/1112+17583182..17590737transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g29530Os.41695.2.S1_x_at9/1112+17583182..17590737transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g29530Os.41695.5.S1_x_at9/1112+17583182..17590737transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g29530Os.41695.3.S1_x_at8/1112+17583182..17590737transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g29530Os.41695.4.S1_x_at1/1112+17583182..17590737transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g29540OsAffx.31928.1.S1_at11/1112+17601949..17603971hypothetical protein
LOC_Os12g29550Os.5901.1.S1_at11/1112+17606379..17612543expressed protein
LOC_Os12g29560Os.14424.1.S1_at11/1112+17613382..17617948DHHC zinc finger domain containing protein, expressed
LOC_Os12g29570Os.22484.1.A1_at11/1112+17618456..17619268one helix protein, putative, expressed
LOC_Os12g29570OsAffx.27590.1.S1_at1/1112+17618456..17619268one helix protein, putative, expressed
LOC_Os12g29580Os.19371.1.S1_at11/1112+17622105..17626347protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31928.1.S1_at--748--8351Chr12:17603669..17603693 (25 bp)
GGCGGCGTCACGCAGCTTCTTGCCA
LOC_Os12g29540
OsAffx.31928.1.S1_at--1004--1931Chr12:17603732..17603756 (25 bp)
ACGGCGACGTCACGTAGCTTCTTGA
LOC_Os12g29540
OsAffx.31928.1.S1_at--859--1551Chr12:17603747..17603771 (25 bp)
AGCTTCTTGACATCCATGGCGTCGG
LOC_Os12g29540
OsAffx.31928.1.S1_at--190--3231Chr12:17603792..17603816 (25 bp)
CAAGATGCGAGCAACGAGGTGAGCC
LOC_Os12g29540
OsAffx.31928.1.S1_at--133--7731Chr12:17603819..17603843 (25 bp)
GGTGGCGACGTGATCACAAGTGCTA
LOC_Os12g29540
OsAffx.31928.1.S1_at--967--10031Chr12:17603842..17603866 (25 bp)
TAGAGGTGAGATACGCAGCAGCCCA
LOC_Os12g29540
OsAffx.31928.1.S1_at--864--5051Chr12:17603856..17603880 (25 bp)
GCAGCAGCCCACGATGGTTCAATGT
LOC_Os12g29540
OsAffx.31928.1.S1_at--478--6251Chr12:17603868..17603892 (25 bp)
GATGGTTCAATGTCTATCTCGGAAG
LOC_Os12g29540
OsAffx.31928.1.S1_at--1139--431Chr12:17603883..17603907 (25 bp)
ATCTCGGAAGGAAGGGTTACATGCG
LOC_Os12g29540
OsAffx.31928.1.S1_at--446--3531Chr12:17603902..17603926 (25 bp)
CATGCGATTGGAGGTGAAGCGACAC
LOC_Os12g29540
OsAffx.31928.1.S1_at--437--5411Chr12:17603917..17603941 (25 bp)
GAAGCGACACACGTTTAATGAGTTT
LOC_Os12g29540
Target Sequence 
GGCGGCGTCACGCAGCTTCTTGCCATCCATGGCGCCGACGGCCACCTCACCTTCATGCGCACGACGGCGACGTCACGTAG
CTTCTTGACATCCATGGCGTCGGGGCATGGTAAGCGGCGGTGGCAAGATGCGAGCAACGAGGTGAGCCGCGGTGGCGACG
TGATCACAAGTGCTAGAGGTGAGATACGCAGCAGCCCACGATGGTTCAATGTCTATCTCGGAAGGAAGGGTTACATGCGA
TTGGAGGTGAAGCGACACACGTTTAATGAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis