Browse Element(s) Details


OsAffx.27590.1.S1_at

Description tigr:9634.m01265
TID=OsAffx.27590.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g295701/11one helix protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29540OsAffx.31928.1.S1_at11/1112+17601949..17603971hypothetical protein
LOC_Os12g29550Os.5901.1.S1_at11/1112+17606379..17612543expressed protein
LOC_Os12g29560Os.14424.1.S1_at11/1112+17613382..17617948DHHC zinc finger domain containing protein, expressed
LOC_Os12g29570Os.22484.1.A1_at11/1112+17618456..17619268one helix protein, putative, expressed
LOC_Os12g29570OsAffx.27590.1.S1_at1/1112+17618456..17619268one helix protein, putative, expressed
LOC_Os12g29580Os.19371.1.S1_at11/1112+17622105..17626347protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009644biological_processresponse to high light intensity
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27590.1.S1_at--637--5951NONE
GAGCAACCCTATCCTTGATGGTGAT
NONE
OsAffx.27590.1.S1_at--480--1491Chr06:6972658..6972679 (22 bp)
AGCAACCCTATCCTTGATGGTGATG
NONE
OsAffx.27590.1.S1_at--1011--4311NONE
CCTTGATGGTGATGGGAGTGCACAT
NONE
OsAffx.27590.1.S1_at--658--6111Chr06:6973450..6973474 (25 bp)
GAGTGCACATGGAAAAGAGAAGAAT
NONE
OsAffx.27590.1.S1_at--365--10411Chr06:6973474..6973498 (25 bp)
TTATTGAGGGTGTTCTTCATCAGGG
NONE
OsAffx.27590.1.S1_at--851--51Chr06:6973476..6973500 (25 bp)
ATTGAGGGTGTTCTTCATCAGGGAC
NONE
OsAffx.27590.1.S1_at--457--8891Chr06:6973478..6973502 (25 bp)
TGAGGGTGTTCTTCATCAGGGACTA
NONE
OsAffx.27590.1.S1_at--835--7712Chr12:17618997..17619091 (24 bp)
GGGTGTTCTTCATCAGGGACTAGAT
LOC_Os12g29570
OsAffx.27590.1.S1_at--156--7431Chr06:6973483..6973507 (25 bp)
GTGTTCTTCATCAGGGACTAGATGA
NONE
OsAffx.27590.1.S1_at--219--5711Chr06:6973498..6973522 (25 bp)
GACTAGATGATGATTCCTTCTTCAC
NONE
OsAffx.27590.1.S1_at--612--2031Chr06:6973499..6973523 (25 bp)
ACTAGATGATGATTCCTTCTTCACC
NONE
Target Sequence 
GAGCAACCCTATCCTTGATGGTGATGGGAGTGCACATGGAAAAGAGAAGAATTATTGAGGGTGTTCTTCATCAGGGACTA
GATGATGATTCCTTCTTCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis