Browse Element(s) Details


Os.19378.1.S1_at

Description gb:AK062800.1
DB_XREF= gi:32972818
TID=Os.19378.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-C12, full insert sequence.
FL= gb:AK062800.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1894011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18910OsAffx.12110.1.S1_at10/112+11042928..11043707hypothetical protein
LOC_Os02g18920NANA2+11050815..11051625hypothetical protein
LOC_Os02g18930OsAffx.24314.1.S1_at11/112+11057582..11059929Calcineurin B-like protein 4, putative
LOC_Os02g18940Os.19378.1.S1_at11/112+11066131..11067378expressed protein
LOC_Os02g18954Os.54094.1.S1_at10/112+11071693..11077519GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g18954Os.32544.1.S1_at1/112+11071693..11077519GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g18954Os.50295.1.S1_at1/112+11071693..11077519GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g18970NANA2+11083113..11086850retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18980NANA2+11089999..11091500retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19378.1.S1_at--184--8451Chr02:11066698..11066722 (25 bp)
GGCCAGTGCTATTGTTGATGCATAT
LOC_Os02g18940
Os.19378.1.S1_at--185--5311Chr02:11066661..11066685 (25 bp)
GAAGGCACTCTCCTTAGGCAAGCAA
LOC_Os02g18940
Os.19378.1.S1_at--106--3231Chr02:11066643..11066667 (25 bp)
CAAGCAAGGGACTTGATGAACCCTA
LOC_Os02g18940
Os.19378.1.S1_at--849--7871Chr02:11066545..11066569 (25 bp)
GGTTTCACATTCATACTTTCCTAGT
LOC_Os02g18940
Os.19378.1.S1_at--332--8151Chr02:11066416..11066440 (25 bp)
GGACAATGGTTATACTTGACTGATT
LOC_Os02g18940
Os.19378.1.S1_at--868--6591Chr02:11066384..11066408 (25 bp)
GATTGATGTAGCTTTGTATGGTGTA
LOC_Os02g18940
Os.19378.1.S1_at--477--9031Chr02:11066293..11066317 (25 bp)
TGCACTTATATGCTTACTGGTTAAC
LOC_Os02g18940
Os.19378.1.S1_at--220--10651Chr02:11066235..11066259 (25 bp)
TTCCCTCTAAAGTTGTATGTATGTC
LOC_Os02g18940
Os.19378.1.S1_at--793--10111Chr02:11066220..11066244 (25 bp)
TATGTATGTCTCCAAGATCCTTGTG
LOC_Os02g18940
Os.19378.1.S1_at--376--6371Chr02:11066205..11066229 (25 bp)
GATCCTTGTGATGAGTTAGTTAATG
LOC_Os02g18940
Os.19378.1.S1_at--472--6371Chr02:11066158..11066182 (25 bp)
GATCCTTCTGATCTACCACATATTT
LOC_Os02g18940
Target Sequence 
GGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTCTCCTTAGGCAAGCAAGGGACTTGATGAACCCTA
NAAATCATCAAAAGAATTGAGGAGATACTAAAATTAATCAAGGATAAATACCTCTGACTCNTTTAAGAAAATGGGGGTTT
CACATTCATACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCNTTGCATACTCTGCTTTNTGCGCAGC
ATCCTGNCTCATCGTTCCAATCGGATTCNTCCATTGNCTGCTTGAAATGGACAATGGTTATACTTGACTGATTAAATGNC
AGATTGATGTAGCTTTGTATGGTGTAAAAGTGATTGTAGCNATGTGNATATATCAATGCAATTTTCAGTTAGAAGTCTTN
CCTTCCTTTCTTTTTGCACTTATATGCTTACTGGTTAACAGGGTTGTAACTNNNTGATAAATATAGATTTTTTTCCCTCT
AAAGTTGTATGTATGTCTCCAAGATCCTTGTGATGAGTTAGTTAATGATTCAACTCGAATAATTGTACAGATCCTTCTGA
TCTACCACATATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis