Browse Element(s) Details


Os.19480.1.S1_at

Description gb:AK068144.1
DB_XREF= gi:32978162
TID=Os.19480.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19480 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135G08, full insert sequence.
FL= gb:AK068144.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2087011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20820Os.47463.1.S1_x_at6/113+11769165..11773944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g20820Os.14491.2.S1_x_at5/113+11769165..11773944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g20830OsAffx.12957.1.S1_at11/113+11774552..11775088hypothetical protein
LOC_Os03g20840OsAffx.25172.1.S1_at11/113+11777136..11780357NB-ARC domain containing protein, expressed
LOC_Os03g20850OsAffx.26595.1.S1_s_at11/113+11784022..11786638secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os03g20850Os.15776.1.S1_at11/113+11784022..11786638secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os03g20860OsAffx.23885.1.S1_s_at11/113+11787185..11792036expressed protein
LOC_Os03g20860Os.8860.1.S1_at11/113+11787185..11792036expressed protein
LOC_Os03g20860OsAffx.12958.1.S1_at6/113+11787185..11792036expressed protein
LOC_Os03g20870Os.19480.1.S1_at11/113+11795300..11797085Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g20880OsAffx.12959.1.S1_at11/113+11798795..11802273Pyruvate kinase, cytosolic isozyme, putative
LOC_Os03g20890OsAffx.4986.1.S1_at2/113+11810150..11813676transposon protein, putative, Mutator sub-class
LOC_Os03g20900Os.51525.1.S1_at11/113+11817803..11820050transfactor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19480.1.S1_at--571--3931Chr03:11796726..11796750 (25 bp)
CGGCGACGAGCTCATTGGCAATGCA
LOC_Os03g20870
Os.19480.1.S1_at--834--4791Chr03:11796807..11796831 (25 bp)
GCTCTCGTGGCCTTTTGGCGGGTTA
LOC_Os03g20870
Os.19480.1.S1_at--113--8371Chr03:11796823..11796847 (25 bp)
GGCGGGTTATTCTCGCACAGATCGA
LOC_Os03g20870
Os.19480.1.S1_at--1083--9391Chr03:11796862..11796886 (25 bp)
TCGTCGTGACGGCAAAATGCAGCAA
LOC_Os03g20870
Os.19480.1.S1_at--720--6551Chr03:11796894..11796918 (25 bp)
GATTAGTTCAGTTGTCTAGTTGAGT
LOC_Os03g20870
Os.19480.1.S1_at--913--6651Chr03:11796912..11796936 (25 bp)
GTTGAGTAGTTGTATGTCCCTGCAT
LOC_Os03g20870
Os.19480.1.S1_at--350--1251Chr03:11796919..11796943 (25 bp)
AGTTGTATGTCCCTGCATCAGTGCA
LOC_Os03g20870
Os.19480.1.S1_at--576--4971Chr03:11796933..11796957 (25 bp)
GCATCAGTGCATTCTTGTATAGTTG
LOC_Os03g20870
Os.19480.1.S1_at--410--291Chr03:11796951..11796975 (25 bp)
ATAGTTGGATAGCTGCATTTGTTCT
LOC_Os03g20870
Os.19480.1.S1_at--49--7511Chr03:11797006..11797030 (25 bp)
GTGGTTAAGGTGAGCATCTGTGATA
LOC_Os03g20870
Os.19480.1.S1_at--1096--2451Chr03:11797041..11797065 (25 bp)
AACACCAGTTTAAGCGAGACATTAG
LOC_Os03g20870
Target Sequence 
CGGCGACGAGCTCATTGGCAATGCACGCGGCGGCGGCGGCGATGGTGATGGCGACGGAGGAAGCAGTGGCAGGAGGCGCT
GGCTCTCGTGGCCTTTTGGCGGGTTATTCTCGCACAGATCGAGCAGGAGGTCCTCCTCGTCGTGACGGCAAAATGCAGCA
AACAATGTGATTAGTTCAGTTGTCTAGTTGAGTAGTTGTATGTCCCTGCATCAGTGCATTCTTGTATAGTTGGATAGCTG
CATTTGTTCTTTGGNTCGAAACTTGAAACTGTAATTTTTGGGTGGTTAAGGTGAGCATCTGTGATAAACATTTNNAAACA
CCAGTTTAAGCGAGACATTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis