Browse Element(s) Details


Os.19611.3.S1_at

Description gb:CB656337
DB_XREF= gi:29660062
DB_XREF=OSJNEc10J06.r
CLONE=OSJNEc10J06
TID=Os.19611.3
CNT=13
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.19611 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative oxygen evolving complex protein (OSJNBa0042E19.4), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3230011/11tetratricopeptide repeat, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32240Os.9332.2.S1_x_at3/1110+16597513..16599612retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32240Os.9332.2.S1_at1/1110+16597513..16599612retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g32250OsAffx.20387.1.S1_x_at1/1110+16599865..16602462transposon protein, putative, unclassified
LOC_Os10g32260NANA10+16603416..16606435hypothetical protein
LOC_Os10g32270Os.23611.1.S1_at11/1110+16608980..16614024expressed protein
LOC_Os10g32270Os.23611.2.S1_x_at11/1110+16608980..16614024expressed protein
LOC_Os10g32280OsAffx.30261.2.S1_s_at11/1110+16614464..16614912hypothetical protein
LOC_Os10g32290NANA10+16615916..16618392transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g32300Os.19611.3.S1_at11/1110+16621510..16627595tetratricopeptide repeat, putative, expressed
LOC_Os10g32300OsAffx.30640.1.S1_x_at1/1110+16621510..16627595tetratricopeptide repeat, putative, expressed
LOC_Os10g32324OsAffx.30638.1.S1_at11/1110+16627846..16629231hypothetical protein
LOC_Os10g32348Os.19611.1.S1_a_at11/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.30640.1.S1_x_at10/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.30640.1.S1_at8/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.17159.1.S1_x_at2/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32372OsAffx.30638.1.S1_at11/1110+16647677..16649062hypothetical protein
LOC_Os10g32400OsAffx.30640.1.S1_x_at10/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32400OsAffx.30640.1.S1_at8/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32400Os.19611.1.S1_a_at6/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32400OsAffx.17159.1.S1_x_at2/1110+16652353..16661910PsbP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19611.3.S1_at--426--3031Chr10:16622049..16622073 (25 bp)
AATGCCCTGGGAGTCAGCTACAAGC
LOC_Os10g32300
Os.19611.3.S1_at--552--5611Chr10:16622010..16622034 (25 bp)
GACAAGTCGATCCAGCAATTTGAGA
LOC_Os10g32300
Os.19611.3.S1_at--161--10532Chr08:15642497..15642519 (23 bp)
TTCAGCCAGGCTATGTGACAGCTTG
NONE
Os.19611.3.S1_at--557--2851Chr10:16621908..16621932 (25 bp)
AAGTCTGCGCTCAAGGCATTCGAGG
LOC_Os10g32300
Os.19611.3.S1_at--936--6151Chr10:16621884..16621908 (25 bp)
GAGGTACTCCTATTTGATCCAAACA
LOC_Os10g32300
Os.19611.3.S1_at--688--8831Chr10:16621870..16621894 (25 bp)
TGATCCAAACAACACGGTCGCCAGG
LOC_Os10g32300
Os.19611.3.S1_at--929--8432Chr08:15642625..15642886 (25 bp)
GGCCACGCCGAGATGACCTAAAGCA
NONE
Os.19611.3.S1_at--329--2892Chr08:15642666..15642690 (25 bp)
AAGGGAGTCCCAGTGAAGTCAGAAA
NONE
Os.19611.3.S1_at--551--10831Chr10:16621717..16621741 (25 bp)
TTGTGCATAATTGTGCGCGCAACAT
LOC_Os10g32300
Os.19611.3.S1_at--1025--1471Chr10:16621671..16621695 (25 bp)
AGCAGTAGGCTCAGATCTCAAATTT
LOC_Os10g32300
Os.19611.3.S1_at--774--10451Chr10:16621598..16621622 (25 bp)
TTAGCAACGGCTAGCTGCGTAGGAT
LOC_Os10g32300
Target Sequence 
AATGCCCTGGGAGTCAGCTACAAGCGAGATAACAAACTTGACAAGTCGATCCAGCAATTTGAGAAGGCTGTTGAGCTTCA
GCCAGGCTATGTGACAGCTTGGAACAACCTCGGGGACGCATATGAGCAAAAGAAAGATCTGAAGTCTGCGCTCAAGGCAT
TCGAGGAGGTACTCCTATTTGATCCAAACAACACGGTCGCCAGGCCACGCCGAGATGACCTAAAGCAGCGTGTGGGCATG
TACAAGGGAGTCCCAGTGAAGTCAGAAAAACGATAGGTCCTGTGAGTATGTGTTAAGGGGGGCGCGCTTGTGTGTGTTAG
TGTGGTGTGCATTTGTGCATAATTGTGCGCGCAACATGTAATTGGGGAAAAGTAGAAAAGCAGTAGGCTCAGATCTCAAA
TTTGTGCAAAATCTTTGTTTCCTCAATTTTGAACGGTAGTATATGTTTTAATTAGCAACGGCTAGCTGCGTAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19611.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis