Browse Element(s) Details


Os.1984.1.S1_at

Description gb:AF045770.1
DB_XREF= gi:2895865
GEN=MMSDH1
TID=Os.1984.1
CNT=38
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.1984 (NCBI UniGene Cluster)
DEF=Oryza sativa methylmalonate semi-aldehyde dehydrogenase (MMSDH1) mRNA, complete cds.
PROD=methylmalonate semi-aldehyde dehydrogenase
FL= gb:AF045770.1 gb:AK121280.1 gb:AK065917.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0906011/11methylmalonate-semialdehyde dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09020Os.53826.1.S1_at11/117+4701278..4710817Argonaute-like protein At2g27880, putative, expressed
LOC_Os07g09030NANA7+4716943..4717257hypothetical protein
LOC_Os07g09040OsAffx.16163.1.S1_at11/117+4720067..4725266peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os07g09040OsAffx.16163.1.S1_x_at11/117+4720067..4725266peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os07g09050Os.51833.1.S1_x_at11/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050Os.51833.3.S1_at11/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050Os.51833.2.S1_at10/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050OsAffx.1782.1.S1_x_at1/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050OsAffx.27499.3.S1_x_at1/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09060Os.1984.1.S1_at11/117+4732926..4739754methylmalonate-semialdehyde dehydrogenase, putative, expressed
LOC_Os07g09070OsAffx.16164.1.S1_at11/117+4742360..4743824hypothetical protein
LOC_Os07g09080NANA7+4748547..4750293retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09090OsAffx.28357.1.S1_at11/117+4751594..4753518hypothetical protein
LOC_Os07g09100OsAffx.5259.1.S1_at11/117+4754149..4755372hypothetical protein
LOC_Os07g09110Os.54796.1.S1_at11/117+4756823..4758571F-box domain containing protein
LOC_Os07g09120OsAffx.16165.1.S1_at10/117+4761684..4763355expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009450biological_processgamma-aminobutyric acid catabolism
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
GO:0004777molecular_functionsuccinate-semialdehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1984.1.S1_at--888--6511Chr07:4737376..4737493 (25 bp)
GATATTGTGGTTCCTAACTTCGAGA
LOC_Os07g09060
Os.1984.1.S1_at--468--5291Chr07:4737492..4737516 (25 bp)
GAATGGTAATTTTGTTGGTCCAACA
LOC_Os07g09060
Os.1984.1.S1_at--404--7271Chr07:4737509..4737533 (25 bp)
GTCCAACACTCCTTGCTGATGTTAA
LOC_Os07g09060
Os.1984.1.S1_at--172--10591Chr07:4738485..4738583 (25 bp)
TTCTCTTGATGAAGGCTGAGAGCCT
LOC_Os07g09060
Os.1984.1.S1_at--723--6291Chr07:4738585..4738609 (25 bp)
GATGATGCTATCCAAATTGTGAACA
LOC_Os07g09060
Os.1984.1.S1_at--105--8551Chr07:4738724..4738748 (25 bp)
TGGAGCATCCATATTTACAACATCT
LOC_Os07g09060
Os.1984.1.S1_at--873--2191Chr07:4738740..4738764 (25 bp)
ACAACATCTGGTGTGTCTGCAAGGA
LOC_Os07g09060
Os.1984.1.S1_at--577--9231Chr07:4739499..4739523 (25 bp)
TCCATGCCCACCTCGCAGAAGTGAG
LOC_Os07g09060
Os.1984.1.S1_at--825--9931Chr07:4739548..4739572 (25 bp)
TACGTTCTTCATTTGCCCATCCATG
LOC_Os07g09060
Os.1984.1.S1_at--756--5591Chr07:4739573..4739597 (25 bp)
GAAATAGACACATGCACCAATGCGA
LOC_Os07g09060
Os.1984.1.S1_at--705--271Chr07:4739618..4739642 (25 bp)
ATAGGCGCGGGATGCCATGCCATGC
LOC_Os07g09060
Target Sequence 
GATATTGTGGTTCCTAACTTCGAGAATGGTAATTTTGTTGGTCCAACACTCCTTGCTGATGTTAAAAGTGAAATGGAATG
TTACAAGGAGGAGATTTTTGGTCCAGTTCTTCTCTTGATGAAGGCTGAGAGCCTAGATGATGCTATCCAAATTGTGAACA
GAAACAAATATGGCAATGGAGCATCCATATTTACAACATCTGGTGTGTCTGCAAGGAAATTTCAAACAGACATTGAAGCT
GGCCAGGTGGGCATCAACGTGCCGATTCCAGTACCCCTGCCGTTCTTCTCCTTCACCGGCAGCAAAGCCTCCTTTGCAGG
AGACTTGAATTTNTACGGCAAGGCGGGCGTGCAGTTCTTCACCCAGATCAAGACGGTCACGCAGCAGTGGAAGGAGTCGC
CGGCTCAGCGCGTCTCCCTCTCCATGCCCACCTCGCAGAAGTGAGGTGAAAAAAAAGAAAGGCATCTTGTACGTTCTTCA
TTTGCCCATCCATGGAAATAGACACATGCACCAATGCGAAATGAACAGAAGAATAATCGATAGGCGCGGGATGCCATGCC
ATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis