Browse Element(s) Details


OsAffx.16164.1.S1_at

Description tigr:9635.m00867
TID=OsAffx.16164.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RA39p
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0907011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09040OsAffx.16163.1.S1_at11/117+4720067..4725266peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os07g09040OsAffx.16163.1.S1_x_at11/117+4720067..4725266peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os07g09050Os.51833.1.S1_x_at11/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050Os.51833.3.S1_at11/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050Os.51833.2.S1_at10/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050OsAffx.1782.1.S1_x_at1/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050OsAffx.27499.3.S1_x_at1/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09060Os.1984.1.S1_at11/117+4732926..4739754methylmalonate-semialdehyde dehydrogenase, putative, expressed
LOC_Os07g09070OsAffx.16164.1.S1_at11/117+4742360..4743824hypothetical protein
LOC_Os07g09080NANA7+4748547..4750293retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09090OsAffx.28357.1.S1_at11/117+4751594..4753518hypothetical protein
LOC_Os07g09100OsAffx.5259.1.S1_at11/117+4754149..4755372hypothetical protein
LOC_Os07g09110Os.54796.1.S1_at11/117+4756823..4758571F-box domain containing protein
LOC_Os07g09120OsAffx.16165.1.S1_at10/117+4761684..4763355expressed protein
LOC_Os07g09130OsAffx.5260.1.S1_at11/117+4768188..4769199CHCH domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16164.1.S1_at--322--1031Chr07:4742902..4742926 (25 bp)
AGGTCATTCATGTACGAGCTGCAAC
LOC_Os07g09070
OsAffx.16164.1.S1_at--718--2871Chr07:4742773..4742797 (25 bp)
AAGGGCCACGGAGAGTCCACGCTTG
LOC_Os07g09070
OsAffx.16164.1.S1_at--810--4431Chr07:4742749..4742773 (25 bp)
GCCATCAGGCCCGATAATGTTTACC
LOC_Os07g09070
OsAffx.16164.1.S1_at--763--491Chr07:4742722..4742746 (25 bp)
ATCGGATTCAGGACACAAGCAGCAT
LOC_Os07g09070
OsAffx.16164.1.S1_at--917--2711Chr07:4742706..4742730 (25 bp)
AAGCAGCATCGTGGTTCGCATTCAA
LOC_Os07g09070
OsAffx.16164.1.S1_at--952--1551Chr07:4742677..4742701 (25 bp)
AGCTATAACCAGATCTCTAGGGCAA
LOC_Os07g09070
OsAffx.16164.1.S1_at--54--7611Chr07:4742658..4742682 (25 bp)
GGGCAACTGCTCTCGGGTTTGATGA
LOC_Os07g09070
OsAffx.16164.1.S1_at--1035--6851Chr07:4742642..4742666 (25 bp)
GTTTGATGATAGCTACACCTCTCTC
LOC_Os07g09070
OsAffx.16164.1.S1_at--146--8631Chr07:4742582..4742606 (25 bp)
TGTGGTCGGTAAGAAGTCCGCCCAA
LOC_Os07g09070
OsAffx.16164.1.S1_at--700--10151Chr07:4742468..4742492 (25 bp)
TATCTGTGAGGCTGTACGCTTGGTC
LOC_Os07g09070
OsAffx.16164.1.S1_at--663--6711Chr07:4742440..4742464 (25 bp)
GTTCGTACGGACGTCATTACAGTAT
LOC_Os07g09070
Target Sequence 
AGGTCATTCATGTACGAGCTGCAACGGCAGTTGGCCAAGCTGACGGTGAGGACCGCAATAGAGAAGCGACCTGTGCTGCC
CCCATACAAGTGATCAACAAGGGCCACGGAGAGTCCACGCTTGCCATCAGGCCCGATAATGTTTACCTTATCGGATTCAG
GACACAAGCAGCATCGTGGTTCGCATTCAAGAACAGCTATAACCAGATCTCTAGGGCAACTGCTCTCGGGTTTGATGATA
GCTACACCTCTCTCACTGGCAAAGGGGGCTACACAAATCTGAAAGATATTGTGGTCGGTAAGAAGTCCGCCCAAGAAGCA
GTGGCGACCCTAGCCAAGTACAAGAAGGATGGTTCCGTCCCGGAGGAGGAGATCAAGAAAGCATTGACCACATTCATCCT
CATTATCTGTGAGGCTGTACGCTTGGTCCCTGTTCGTACGGACGTCATTACAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis