Browse Element(s) Details


OsAffx.5260.1.S1_at

Description tigr:9635.m00873
TID=OsAffx.5260.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0913011/11CHCH domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09070OsAffx.16164.1.S1_at11/117+4742360..4743824hypothetical protein
LOC_Os07g09080NANA7+4748547..4750293retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09090OsAffx.28357.1.S1_at11/117+4751594..4753518hypothetical protein
LOC_Os07g09100OsAffx.5259.1.S1_at11/117+4754149..4755372hypothetical protein
LOC_Os07g09110Os.54796.1.S1_at11/117+4756823..4758571F-box domain containing protein
LOC_Os07g09120OsAffx.16165.1.S1_at10/117+4761684..4763355expressed protein
LOC_Os07g09130OsAffx.5260.1.S1_at11/117+4768188..4769199CHCH domain containing protein
LOC_Os07g09140Os.14360.1.S1_x_at11/117+4771351..4772709expressed protein
LOC_Os07g09140OsAffx.16166.1.S1_at11/117+4771351..4772709expressed protein
LOC_Os07g09150Os.10750.1.S1_at11/117+4772903..4774911expressed protein
LOC_Os07g09150Os.35273.2.S1_x_at1/117+4772903..4774911expressed protein
LOC_Os07g09150Os.14360.1.S1_x_at1/117+4772903..4774911expressed protein
LOC_Os07g09160NANA7+4776289..4776692hypothetical protein
LOC_Os07g09170Os.47463.1.S1_x_at5/117+4780584..4784284transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g09170Os.14491.2.S1_x_at5/117+4780584..4784284transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g09180NANA7+4787066..4790370transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5260.1.S1_at--612--1191Chr07:4768638..4768662 (25 bp)
AGTTTGTACCCAGGGAGCAAAAGCG
LOC_Os07g09130
OsAffx.5260.1.S1_at--1059--10311Chr07:4768635..4768659 (25 bp)
TTGTACCCAGGGAGCAAAAGCGATC
LOC_Os07g09130
OsAffx.5260.1.S1_at--447--8071Chr07:4768625..4768649 (25 bp)
GGAGCAAAAGCGATCCCTGCGGCGA
LOC_Os07g09130
OsAffx.5260.1.S1_at--518--1491Chr07:4768623..4768647 (25 bp)
AGCAAAAGCGATCCCTGCGGCGAAC
LOC_Os07g09130
OsAffx.5260.1.S1_at--643--6371Chr07:4768614..4768638 (25 bp)
GATCCCTGCGGCGAACCTTACAAGT
LOC_Os07g09130
OsAffx.5260.1.S1_at--357--4191Chr07:4768611..4768635 (25 bp)
CCCTGCGGCGAACCTTACAAGTATA
LOC_Os07g09130
OsAffx.5260.1.S1_at--519--3811Chr07:4768609..4768633 (25 bp)
CTGCGGCGAACCTTACAAGTATACA
LOC_Os07g09130
OsAffx.5260.1.S1_at--238--4711Chr07:4768607..4768631 (25 bp)
GCGGCGAACCTTACAAGTATACATT
LOC_Os07g09130
OsAffx.5260.1.S1_at--1149--8371Chr07:4768605..4768629 (25 bp)
GGCGAACCTTACAAGTATACATTAC
LOC_Os07g09130
OsAffx.5260.1.S1_at--49--3231Chr07:4768302..4768618 (25 bp)
CAAGTATACATTACAGTGCCTGAGC
LOC_Os07g09130
OsAffx.5260.1.S1_at--624--6891Chr07:4768299..4768615 (25 bp)
GTATACATTACAGTGCCTGAGCAGC
LOC_Os07g09130
Target Sequence 
AGTTTGTACCCAGGGAGCAAAAGCGATCCCTGCGGCGAACCTTACAAGTATACATTACAGTGCCTGAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis