Browse Element(s) Details


OsAffx.5259.1.S1_at

Description tigr:9635.m00870
TID=OsAffx.5259.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0910011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09050Os.51833.1.S1_x_at11/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050Os.51833.3.S1_at11/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050Os.51833.2.S1_at10/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050OsAffx.1782.1.S1_x_at1/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050OsAffx.27499.3.S1_x_at1/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09060Os.1984.1.S1_at11/117+4732926..4739754methylmalonate-semialdehyde dehydrogenase, putative, expressed
LOC_Os07g09070OsAffx.16164.1.S1_at11/117+4742360..4743824hypothetical protein
LOC_Os07g09080NANA7+4748547..4750293retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09090OsAffx.28357.1.S1_at11/117+4751594..4753518hypothetical protein
LOC_Os07g09100OsAffx.5259.1.S1_at11/117+4754149..4755372hypothetical protein
LOC_Os07g09110Os.54796.1.S1_at11/117+4756823..4758571F-box domain containing protein
LOC_Os07g09120OsAffx.16165.1.S1_at10/117+4761684..4763355expressed protein
LOC_Os07g09130OsAffx.5260.1.S1_at11/117+4768188..4769199CHCH domain containing protein
LOC_Os07g09140Os.14360.1.S1_x_at11/117+4771351..4772709expressed protein
LOC_Os07g09140OsAffx.16166.1.S1_at11/117+4771351..4772709expressed protein
LOC_Os07g09150Os.10750.1.S1_at11/117+4772903..4774911expressed protein
LOC_Os07g09150Os.35273.2.S1_x_at1/117+4772903..4774911expressed protein
LOC_Os07g09150Os.14360.1.S1_x_at1/117+4772903..4774911expressed protein
LOC_Os07g09160NANA7+4776289..4776692hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5259.1.S1_at--208--8451Chr07:4755145..4755169 (25 bp)
GGCCAGAGGCCGATAAGCTCCAGAA
LOC_Os07g09100
OsAffx.5259.1.S1_at--1128--4211Chr07:4755154..4755178 (25 bp)
CCGATAAGCTCCAGAAGGGCTCCAG
LOC_Os07g09100
OsAffx.5259.1.S1_at--878--5311Chr07:4755167..4755191 (25 bp)
GAAGGGCTCCAGGAGACCGTACGAC
LOC_Os07g09100
OsAffx.5259.1.S1_at--169--5991Chr07:4755179..4755203 (25 bp)
GAGACCGTACGACCCAAGGTACCAG
LOC_Os07g09100
OsAffx.5259.1.S1_at--922--1491Chr07:4755202..4755226 (25 bp)
AGCAGCCCGAGAAGGTTACCCGAGC
LOC_Os07g09100
OsAffx.5259.1.S1_at--535--951Chr07:4755259..4755283 (25 bp)
AGGAAAGCTCCGGAGGCCACCGCGA
LOC_Os07g09100
OsAffx.5259.1.S1_at--1124--6211Chr07:4755271..4755295 (25 bp)
GAGGCCACCGCGAGACTTCGGAGCA
LOC_Os07g09100
OsAffx.5259.1.S1_at--932--1391Chr07:4755283..4755307 (25 bp)
AGACTTCGGAGCATTGATGGGCAGC
LOC_Os07g09100
OsAffx.5259.1.S1_at--913--3591Chr07:4755294..4755318 (25 bp)
CATTGATGGGCAGCGAGAGTCCGAA
LOC_Os07g09100
OsAffx.5259.1.S1_at--450--3391Chr07:4755304..4755328 (25 bp)
CAGCGAGAGTCCGAAGAGCCAGCCG
LOC_Os07g09100
OsAffx.5259.1.S1_at--558--1371Chr07:4755318..4755342 (25 bp)
AGAGCCAGCCGGAGGAAAACACGCC
LOC_Os07g09100
Target Sequence 
GGCCAGAGGCCGATAAGCTCCAGAAGGGCTCCAGGAGACCGTACGACCCAAGGTACCAGCAGCCCGAGAAGGTTACCCGA
GCTCCGGAGCCCGGAGGAGTTCTTGGAGCTCGGGAGGAAAGCTCCGGAGGCCACCGCGAGACTTCGGAGCATTGATGGGC
AGCGAGAGTCCGAAGAGCCAGCCGGAGGAAAACACGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5259.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis