Browse Element(s) Details


Os.14360.1.S1_x_at

Description gb:AK099833.1
DB_XREF= gi:32985042
TID=Os.14360.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106C07, full insert sequence.
FL= gb:AK099833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0914011/11expressed protein
LOC_Os07g091501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09080NANA7+4748547..4750293retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09090OsAffx.28357.1.S1_at11/117+4751594..4753518hypothetical protein
LOC_Os07g09100OsAffx.5259.1.S1_at11/117+4754149..4755372hypothetical protein
LOC_Os07g09110Os.54796.1.S1_at11/117+4756823..4758571F-box domain containing protein
LOC_Os07g09120OsAffx.16165.1.S1_at10/117+4761684..4763355expressed protein
LOC_Os07g09130OsAffx.5260.1.S1_at11/117+4768188..4769199CHCH domain containing protein
LOC_Os07g09140Os.14360.1.S1_x_at11/117+4771351..4772709expressed protein
LOC_Os07g09140OsAffx.16166.1.S1_at11/117+4771351..4772709expressed protein
LOC_Os07g09150Os.10750.1.S1_at11/117+4772903..4774911expressed protein
LOC_Os07g09150Os.35273.2.S1_x_at1/117+4772903..4774911expressed protein
LOC_Os07g09150Os.14360.1.S1_x_at1/117+4772903..4774911expressed protein
LOC_Os07g09160NANA7+4776289..4776692hypothetical protein
LOC_Os07g09170Os.47463.1.S1_x_at5/117+4780584..4784284transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g09170Os.14491.2.S1_x_at5/117+4780584..4784284transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g09180NANA7+4787066..4790370transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14360.1.S1_x_at--862--7172Chr07:4771803..4771827 (25 bp)
GTCTGGTACTACGAGGACGTCGTCA
LOC_Os07g09140
Os.14360.1.S1_x_at--704--4031Chr07:4771838..4771862 (25 bp)
CGTTCGCTGGAACTTCTTCAATGGT
LOC_Os07g09140
Os.14360.1.S1_x_at--830--3651Chr07:4771850..4772334 (25 bp)
CTTCTTCAATGGTATGCAGCAGCAT
LOC_Os07g09140
Os.14360.1.S1_x_at--376--8891Chr07:4772364..4772388 (25 bp)
TGAGGACTCCAAATGGCAGGCGCCG
LOC_Os07g09140
Os.14360.1.S1_x_at--474--1591Chr07:4772477..4772501 (25 bp)
AGCTCGATGTGATGAACGCCTTCTT
LOC_Os07g09140
Os.14360.1.S1_x_at--373--5451Chr07:4772490..4772514 (25 bp)
GAACGCCTTCTTCAGGTTTGTAGGA
LOC_Os07g09140
Os.14360.1.S1_x_at--1094--1011Chr07:4772503..4772527 (25 bp)
AGGTTTGTAGGAGCTCCAGCAGCAG
LOC_Os07g09140
Os.14360.1.S1_x_at--1101--3391Chr07:4772531..4772555 (25 bp)
CAGCAGCTTCAGTATGAGCAAGGCT
LOC_Os07g09140
Os.14360.1.S1_x_at--908--5951Chr07:4772546..4772570 (25 bp)
GAGCAAGGCTTACTTTTCACTGATG
LOC_Os07g09140
Os.14360.1.S1_x_at--990--9731Chr07:4772595..4772619 (25 bp)
TCAATCCACTCTGTTTCTTCCTGAA
LOC_Os07g09140
Os.14360.1.S1_x_at--1076--9571Chr07:4772610..4772634 (25 bp)
TCTTCCTGAATCCTGTTGTCATGTG
LOC_Os07g09140
Target Sequence 
GTCTGGTACTACGAGGACGTCGTCACCCACCGCCCCGTTCGCTGGAACTTCTTCAATGGTATGCAGCAGCATGTGATGAG
CTTCGAGGTGGGTGGAGTTCTTGAGGACTCCAAATGGCAGGCGCCGGCTCGCTGCTTCAGCGATCAACACACCGTCATCG
CCGATCCCGGTGCAGCCACCGTCACCGACGACAGGGTAGAAGGTGAGGATGGCAAGCTCGATGTGATGAACGCCTTCTTC
AGGTTTGTAGGAGCTCCAGCAGCAGCAGCAGCAGCTTCAGTATGAGCAAGGCTTACTTTTCACTGATGAGAATGTCACCA
TTGATGACCTGCTCAATCCACTCTGTTTCTTCCTGAATCCTGTTGTCATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14360.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis