Browse Element(s) Details


Os.19842.1.S1_at

Description gb:AK070378.1
DB_XREF= gi:32980402
TID=Os.19842.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19842 (NCBI UniGene Cluster)
UG_TITLE=MRNA for threonyl-tRNA synthetase, partial
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052L01, full insert sequence.
FL= gb:AK070378.1 gb:AK059095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1985010/11Threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19830Os.36955.1.S1_at11/118+11863639..11873188Ubiquitin family protein, expressed
LOC_Os08g19840OsAffx.17078.1.S1_at11/118+11874016..11874782hypothetical protein
LOC_Os08g19850Os.19842.1.S1_at10/118+11881554..11891135Threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed
LOC_Os08g19860NANA8+11894881..11897234hypothetical protein
LOC_Os08g19870OsAffx.29282.1.S1_at11/118+11897989..11900450hAT family dimerisation domain containing protein
LOC_Os08g19880NANA8+11903454..11904650hypothetical protein
LOC_Os08g19890OsAffx.22699.1.S1_x_at2/118+11905151..11913981retrotransposon protein, putative, unclassified
LOC_Os08g19890OsAffx.8201.1.S1_x_at1/118+11905151..11913981retrotransposon protein, putative, unclassified
LOC_Os08g19890OsAffx.18275.1.S1_x_at1/118+11905151..11913981retrotransposon protein, putative, unclassified
LOC_Os08g19890OsAffx.593.1.S1_at1/118+11905151..11913981retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0006435biological_processthreonyl-tRNA aminoacylation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0004829molecular_functionthreonine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19842.1.S1_at--492--7611Chr08:11883561..11883585 (25 bp)
GGGCAATCCTAGGTTCTGTTGAAAG
LOC_Os08g19850
Os.19842.1.S1_at--72--2311Chr08:11883502..11883526 (25 bp)
AAATGGCCCTTGTGGTTGAGTCCTC
LOC_Os08g19850
Os.19842.1.S1_at--146--9331Chr08:11883479..11883503 (25 bp)
TCGCCAAGCCATTGTTTGCTCCATA
LOC_Os08g19850
Os.19842.1.S1_at--736--10711Chr08:11883464..11883488 (25 bp)
TTGCTCCATATCTTCCAATTCAGTG
LOC_Os08g19850
Os.19842.1.S1_at--147--8191NONE
GGAATACGCTAAACAGGTCCGTGCT
NONE
Os.19842.1.S1_at--368--2691Chr08:11882399..11882423 (25 bp)
AAGCTGGTTTTCATGTAGCCATCGA
LOC_Os08g19850
Os.19842.1.S1_at--316--6971Chr08:11882097..11882121 (25 bp)
GTACGGGAGGCTCAATTAGCCCAAT
LOC_Os08g19850
Os.19842.1.S1_at--493--9991Chr08:11881781..11881805 (25 bp)
TAGCCACAGTGAGCATTGATGACAT
LOC_Os08g19850
Os.19842.1.S1_at--925--6311Chr08:11881764..11881788 (25 bp)
GATGACATCATCACACGTTTTAAGG
LOC_Os08g19850
Os.19842.1.S1_at--843--10251Chr08:11881715..11881739 (25 bp)
TTTGATTTCACACCCTTTTGCTAAG
LOC_Os08g19850
Os.19842.1.S1_at--836--1631Chr08:11881658..11881682 (25 bp)
AGCGGGCAGTGTAATCTTGCTATTT
LOC_Os08g19850
Target Sequence 
GGGCAATCCTAGGTTCTGTTGAAAGGATGTTTGCTATTCTTTTGGAGCATTACAATGGTAAATGGCCCTTGTGGTTGAGT
CCTCGCCAAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGGTCCGTGCTAGGATACATGAAGC
TGGTTTTCATGTAGCCATCGATGAGACAGACAGGACAATACAGAAGAAGGTACGGGAGGCTCAATTAGCCCAATTCAANT
ACATTCTTGTCGTTGGTGCACAAGAAGCAGAGACTGGACAGGTCAGCGTCAGGGTAAGGGACAAAGCTGAACTAGCCACA
GTGAGCATTGATGACATCATCACACGTTTTAAGGAGGAAGTAGCAGCTTACAAATGATTTTGATTTCACACCCTTTTGCT
AAGAATTTACTCCAAATTTGTGATTTTGATGGTGTAGCGGGCAGTGTAATCTTGCTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis