Browse Element(s) Details


Os.36955.1.S1_at

Description gb:AK062297.1
DB_XREF= gi:32972315
TID=Os.36955.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-G02, full insert sequence.
FL= gb:AK062297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1983011/11Ubiquitin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19770OsAffx.29281.1.S1_at11/118+11834794..11839017hypothetical protein
LOC_Os08g19780Os.52794.1.S1_at3/118+11842913..11843542hypothetical protein
LOC_Os08g19790NANA8+11844467..11845412retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19800OsAffx.5878.1.S1_at10/118+11848173..11849990hypothetical protein
LOC_Os08g19810OsAffx.17076.1.S1_at11/118+11850564..11850839hypothetical protein
LOC_Os08g19820OsAffx.17077.1.S1_at11/118+11853158..11855233hypothetical protein
LOC_Os08g19830Os.36955.1.S1_at11/118+11863639..11873188Ubiquitin family protein, expressed
LOC_Os08g19840OsAffx.17078.1.S1_at11/118+11874016..11874782hypothetical protein
LOC_Os08g19850Os.19842.1.S1_at10/118+11881554..11891135Threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed
LOC_Os08g19860NANA8+11894881..11897234hypothetical protein
LOC_Os08g19870OsAffx.29282.1.S1_at11/118+11897989..11900450hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36955.1.S1_at--527--8871Chr08:11864597..11864621 (25 bp)
TGATGAGGGTCTACGGTTCGCTAGC
LOC_Os08g19830
Os.36955.1.S1_at--43--6711Chr08:11864582..11864606 (25 bp)
GTTCGCTAGCTTAGTTCGCCAAATT
LOC_Os08g19830
Os.36955.1.S1_at--156--10431Chr08:11864559..11864583 (25 bp)
TTATGCCATTTATTTCCCAAGTTGA
LOC_Os08g19830
Os.36955.1.S1_at--850--3311Chr08:11864419..11864441 (23 bp)
CACAGGCTGCACATGGGAACTTGAA
LOC_Os08g19830
Os.36955.1.S1_at--1050--7751Chr08:11864381..11864405 (25 bp)
GGTCCAAGTCATTCCAGGAGTTCAC
LOC_Os08g19830
Os.36955.1.S1_at--288--6471Chr08:11863969..11863993 (25 bp)
GATAAAGATCTTCATGTCCTCCGGG
LOC_Os08g19830
Os.36955.1.S1_at--737--7691Chr08:11863946..11863970 (25 bp)
GGGTCACCGTTTTGCAAGATAAGCC
LOC_Os08g19830
Os.36955.1.S1_at--593--3131Chr08:11863918..11863942 (25 bp)
AATTTTGCCGATTCTCACTGCGAGG
LOC_Os08g19830
Os.36955.1.S1_at--599--8271Chr08:11863839..11863863 (25 bp)
GGCAGTGTATAGTTGGCATCCGGTT
LOC_Os08g19830
Os.36955.1.S1_at--264--4971Chr08:11863824..11863848 (25 bp)
GCATCCGGTTCATTAGTCAAGGCAC
LOC_Os08g19830
Os.36955.1.S1_at--184--191Chr08:11863780..11863804 (25 bp)
ATTTCCTGCGGATCGGTTGTAATGT
LOC_Os08g19830
Target Sequence 
TGATGAGGGTCTACGGTTCGCTAGCTTAGTTCGCCAAATTATGCCATTTATTTCCCAAGTTGAGTCACATCATCAAAGNG
CCTCAGCAGTCAGTAGCAGCACCCCTTCACAGGCTGCACATGGGAACTTGAATACTGCAAGAGCTGGTCCAAGTCATTCC
AGGAGTTCACATCAACATAACCGTGATCCAGTTGATGGACCTAATTNTAAAAGGCAAAGAACAAGTGAGTGATAAAGATC
TTCATGTCCTCCGGGGTCACCGTTTTGCAAGATAAGCCGAGAATTTTGCCGATTCTCACTGCGAGGATGGACTGTCATGA
ATGTCTTGACAGAGTTGAGGGCAGTGGATTATTATTATTTGGCAGTGTATAGTTGGCATCCGGTTCATTAGTCAAGGCAC
CATCTTTTTTTTTTTTGCCCATTTCCTGCGGATCGGTTGTAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis