Browse Element(s) Details


OsAffx.5878.1.S1_at

Description tigr:9636.m01949
TID=OsAffx.5878.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1980010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19760NANA8+11823421..11825833retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19770OsAffx.29281.1.S1_at11/118+11834794..11839017hypothetical protein
LOC_Os08g19780Os.52794.1.S1_at3/118+11842913..11843542hypothetical protein
LOC_Os08g19790NANA8+11844467..11845412retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19800OsAffx.5878.1.S1_at10/118+11848173..11849990hypothetical protein
LOC_Os08g19810OsAffx.17076.1.S1_at11/118+11850564..11850839hypothetical protein
LOC_Os08g19820OsAffx.17077.1.S1_at11/118+11853158..11855233hypothetical protein
LOC_Os08g19830Os.36955.1.S1_at11/118+11863639..11873188Ubiquitin family protein, expressed
LOC_Os08g19840OsAffx.17078.1.S1_at11/118+11874016..11874782hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5878.1.S1_at--959--4831Chr08:11849364..11849429 (25 bp)
GCTAATGAGGAGAGCCGCACCGCAA
LOC_Os08g19800
OsAffx.5878.1.S1_at--294--7231Chr08:11849287..11849311 (25 bp)
GTCGACACTCTGGAAGATCTTCTCT
LOC_Os08g19800
OsAffx.5878.1.S1_at--1134--2791Chr08:11849223..11849247 (25 bp)
AAGATGATGGCACTCGCTACAAGGA
LOC_Os08g19800
OsAffx.5878.1.S1_at--953--6971Chr08:11849198..11849222 (25 bp)
GTACGCACTTCCTTGTAGAGCTGAA
LOC_Os08g19800
OsAffx.5878.1.S1_at--99--4191Chr08:11849163..11849187 (25 bp)
CCCGTGGCCCCGAGGATGAAGATGA
LOC_Os08g19800
OsAffx.5878.1.S1_at--931--9511Chr08:11849098..11849122 (25 bp)
TCTCTCTGGGATCGGCTTAGTGGTC
LOC_Os08g19800
OsAffx.5878.1.S1_at--462--9271Chr08:11849071..11849095 (25 bp)
TCCTCCAGTCACAGCAGGGATACGG
LOC_Os08g19800
OsAffx.5878.1.S1_at--853--8151Chr08:11848996..11849020 (25 bp)
GGAAAGGAACGCTCTGATCATAGGA
LOC_Os08g19800
OsAffx.5878.1.S1_at--126--6431Chr08:11848981..11849005 (25 bp)
GATCATAGGAGTCGCAGCCACCGGT
LOC_Os08g19800
OsAffx.5878.1.S1_at--538--7171NONE
GTCTCGCGATCCAACGCTACAAGAA
NONE
OsAffx.5878.1.S1_at--930--8291Chr08:11848248..11848272 (25 bp)
GGCTTCTCTGAAGACCATTGCTGAT
LOC_Os08g19800
Target Sequence 
GCTAATGAGGAGAGCCGCACCGCAACCCTCCTCCCTCCGAGCCAAAGAAGGGCTAGACCTACAATGTCCTGGTCCACGTC
GACACTCTGGAAGATCTTCTCTCTCGCAAAGCCCGTGCTTACAAATGGGACTATGAAGTTCAAGATGATGGCACTCGCTA
CAAGGAGTACGCACTTCCTTGTAGAGCTGAACCAGACCCAACCCGTGGCCCCGAGGATGAAGATGAAGACGGAGACAGCC
ACTCCAGGGGCTAGCACCGTAGTCGCTCTCTCTGGGATCGGCTTAGTGGTCGCTCCTCCAGTCACAGCAGGGATACGGAT
CGGTGGGACAGCCAGCGCCGTGATCAGGACAAACGAGGCCAATCACGGGGAAAGGAACGCTCTGATCATAGGAGTCGCAG
CCACCGGTCTCGCGATCCAACGCTACAAGAAGCCGCTCTCCCCGGCTTCTCTGAAGACCATTGCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis