Browse Element(s) Details


Os.52794.1.S1_at

Description gb:AK069295.1
DB_XREF= gi:32979319
TID=Os.52794.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52794 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023018C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023018C05, full insert sequence.
FL= gb:AK069295.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g197803/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19750OsAffx.1755.1.S1_x_at3/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.6502.1.A1_at2/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750OsAffx.1755.1.S1_at2/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750OsAffx.21269.1.S1_x_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750OsAffx.29073.1.S1_x_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.8747.3.S1_x_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750OsAffx.26189.1.S1_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.55580.1.S1_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.6502.1.A1_x_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.31613.1.S1_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19760NANA8+11823421..11825833retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19770OsAffx.29281.1.S1_at11/118+11834794..11839017hypothetical protein
LOC_Os08g19780Os.52794.1.S1_at3/118+11842913..11843542hypothetical protein
LOC_Os08g19790NANA8+11844467..11845412retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19800OsAffx.5878.1.S1_at10/118+11848173..11849990hypothetical protein
LOC_Os08g19810OsAffx.17076.1.S1_at11/118+11850564..11850839hypothetical protein
LOC_Os08g19820OsAffx.17077.1.S1_at11/118+11853158..11855233hypothetical protein
LOC_Os08g19830Os.36955.1.S1_at11/118+11863639..11873188Ubiquitin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52794.1.S1_at--426--4531Chr08:11843095..11843119 (25 bp)
GCCGCCGCCGGAAAAGGCAGACGCA
LOC_Os08g19780
Os.52794.1.S1_at--878--471Chr08:11842983..11843007 (25 bp)
ATCTGTTCAAGTACTGTGACATGGT
LOC_Os08g19780
Os.52794.1.S1_at--646--10491Chr08:11842950..11842974 (25 bp)
TTAAGGAGATTGACGCGGCGACGAC
LOC_Os08g19780
Os.52794.1.S1_at--865--2351Chr08:11842898..11842922 (25 bp)
AAAGCTGTGATTGATCATCCGATCA
NONE
Os.52794.1.S1_at--912--6431Chr08:11842886..11842910 (25 bp)
GATCATCCGATCATCAGTTAGTGAT
NONE
Os.52794.1.S1_at--982--10435Chr03:12018812..12018833 (22 bp)
TTAGGCTGTGTTCTTACCTTCAAGT
NONE
Os.52794.1.S1_at--7--9431NONE
TCGTGCGCACGATTTTTAAACTGCT
NONE
Os.52794.1.S1_at--1092--351NONE
ATAAGGTGTGCTCCGTTTTGCTTGC
NONE
Os.52794.1.S1_at--604--7911Chr08:11842565..11842589 (25 bp)
GGTTGCGAACGCAGCCTTATATATT
NONE
Os.52794.1.S1_at--724--10431NONE
TTATCCATCAGTGAGCATGTGGTTT
NONE
Os.52794.1.S1_at--217--8671NONE
TGTGGTTTGGTAATGAAGCTCTTTG
NONE
Target Sequence 
GCCGCCGCCGGAAAAGGCAGACGCAAGAAGGAGGACGTGGAAACGGTGCTCAAGTGGACCAAGAATTTGGAGACCCAATA
CAACGGGGCCACAAGCAAGTGCAAGTTAGGTNATCTGTTCAAGTACTGTGACATGGTTNCCACCGTTAAGGAGATTGACG
CGGCGACGACCATCACCATCGACCTCCTCAATGCCATAAAGCTGTGATTGATCATCCGATCATCAGTTAGTGATANGTCC
TNGAGGACAAAATCATAGAGATTATTGTATTGCACACTATATTTATTTATTTGTAATAAAGTGTTGCTTAAATAGATAAC
TTAGGCTGTGTTCTTACCTTCAAGTTCCCAACCTCTCTCCCTCGTTTTTCGTGCGCACGATTTTTAAACTGCTAAACATG
CGTATTTTGCAAAAAGTTTCTATATGAAAGTTGCTTAAAAAAAATCAAATTAATCCATTTTCAAAAAAAATAGCTAATAC
TTAATTAATTATGTAATAAGGTGTGCTCCGTTTTGCTTGCCGGGAGGAGGGGTTGCGAACGCAGCCTTATATATTATCCA
TCAGTGAGCATGTGGTTTGGTAATGAAGCTCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis