Browse Element(s) Details


Os.19899.1.S1_x_at

Description gb:AK106830.1
DB_XREF= gi:32992039
TID=Os.19899.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for transcription factor PCF8, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-F07, full insert sequence.
FL= gb:AK106830.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4219011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42150Os.20258.1.S1_at11/1112+26094981..26097138transducin family protein, putative, expressed
LOC_Os12g42160OsAffx.20085.1.S1_x_at11/1112+26097414..26102591kinesin motor protein, putative, expressed
LOC_Os12g42160Os.47736.1.S1_at11/1112+26097414..26102591kinesin motor protein, putative, expressed
LOC_Os12g42170NANA12+26104714..26105331hypothetical protein
LOC_Os12g42180Os.10241.1.S1_at11/1112+26105882..26108174ribosomal protein L14 containing protein, expressed
LOC_Os12g42190Os.19899.1.S1_x_at11/1112+26121447..26125141transposon protein, putative, unclassified, expressed
LOC_Os12g42190Os.19899.2.S1_at11/1112+26121447..26125141transposon protein, putative, unclassified, expressed
LOC_Os12g42190OsAffx.31549.2.S1_x_at1/1112+26121447..26125141transposon protein, putative, unclassified, expressed
LOC_Os12g42200NANA12+26139379..26145397cation/hydrogen exchanger, putative, expressed
LOC_Os12g42210Os.52551.1.S1_at6/1112+26146557..26151053Protease Do-like 5, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19899.1.S1_x_at--616--2051Chr12:26123157..26123181 (25 bp)
ACTTCAGTCCAATGCGTCGCTGTGG
LOC_Os12g42190
Os.19899.1.S1_x_at--1150--891Chr12:26123341..26123365 (25 bp)
AGGCTGCAGCTCTGGGACTTCAAGG
LOC_Os12g42190
Os.19899.1.S1_x_at--167--9831Chr12:26124813..26124834 (22 bp)
TAAAATTGCCTGGTGTTATGTCTGG
LOC_Os12g42190
Os.19899.1.S1_x_at--579--10111Chr12:26124826..26124850 (25 bp)
TATGTCTGGTGTTGTGCCACAAGTC
LOC_Os12g42190
Os.19899.1.S1_x_at--878--4391Chr12:26124841..26124865 (25 bp)
GCCACAAGTCAAAGCCGATCAGCAT
LOC_Os12g42190
Os.19899.1.S1_x_at--946--5351Chr12:26124904..26124928 (25 bp)
GAAGATGATGTCAGCGCCAGGAAAA
LOC_Os12g42190
Os.19899.1.S1_x_at--373--91Chr12:26124957..26124981 (25 bp)
ATTCCAGATCTATGATTCTTCCGGC
LOC_Os12g42190
Os.19899.1.S1_x_at--1006--111Chr12:26124971..26124995 (25 bp)
ATTCTTCCGGCTCATGATTTCCATT
LOC_Os12g42190
Os.19899.1.S1_x_at--299--6531Chr12:26124986..26125010 (25 bp)
GATTTCCATTTCTCTATTCTCTAAC
LOC_Os12g42190
Os.19899.1.S1_x_at--966--7051Chr12:26125027..26125051 (25 bp)
GTAACCTTGACTGTGTTGTGATTCA
LOC_Os12g42190
Os.19899.1.S1_x_at--905--5551Chr12:26125052..26125076 (25 bp)
GAAACCATGTCATTCTGTTGCCTGT
LOC_Os12g42190
Target Sequence 
ACTTCAGTCCAATGCGTCGCTGTGGCCGCCGCCGCCGCAGCCGCCGCCGTCGCAGCACCCGTTCCTGCTGCAGAGGTTCG
CCGCCGCTCCGGCTGAGGTCGCCGGCCTCCCGTTCTTCCTTGCAGGCGGCGTCGGCGGCGCTGCTGCTGCTGCTCCGGCG
GCGACGACCAATGGTGGGGAGCGGAGGCTGCAGCTCTGGGACTTCAAGGAGGAGAGGAAGACATGACTAAAATTGCCTGG
TGTTATGTCTGGTGTTGTGCCACAAGTCAAAGCCGATCAGCATGAAGAAAAATTCAGAACAAGAAAAAGTATTCAGGAAC
TGAAGATGATGTCAGCGCCAGGAAAAAAACTTAAACACCAGAAAAATGGATGTAATTCCAGATCTATGATTCTTCCGGCT
CATGATTTCCATTTCTCTATTCTCTAACAATGTACGATTTAATTGTAACCTTGACTGTGTTGTGATTCAGAAACCATGTC
ATTCTGTTGCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19899.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis