Browse Element(s) Details


Os.19953.1.S1_at

Description gb:AK103084.1
DB_XREF= gi:32988293
TID=Os.19953.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.19953 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033118G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118G18, full insert sequence.
FL= gb:AK103084.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5248011/11Cyclin-dependent kinase inhibitor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52430Os.27901.1.S1_at11/112+32082237..32084304Regulator of ribonuclease-like protein 1, putative, expressed
LOC_Os02g52440OsAffx.12610.1.S1_at11/112+32085646..32086086hypothetical protein
LOC_Os02g52450Os.15987.1.S1_at11/112+32086877..32088937Regulator of ribonuclease-like protein 3, putative, expressed
LOC_Os02g52460Os.54394.1.S1_at11/112+32089453..32092841Zinc knuckle family protein, expressed
LOC_Os02g52470OsAffx.23623.1.S1_x_at7/112+32093970..32097106VEG136 protein, putative, expressed
LOC_Os02g52470OsAffx.23623.1.S1_at2/112+32093970..32097106VEG136 protein, putative, expressed
LOC_Os02g52480Os.19953.1.S1_at11/112+32105442..32107080Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os02g52490Os.48260.1.S1_at11/112+32113141..32114928expressed protein
LOC_Os02g52490Os.48260.1.S2_at9/112+32113141..32114928expressed protein
LOC_Os02g52500OsAffx.24835.1.S1_at11/112+32116910..32118049hypothetical protein
LOC_Os02g52510OsAffx.12611.1.S1_at10/112+32120055..32128825DNA repair protein RAD54, putative
LOC_Os02g52520NANA2+32130555..32136709retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0042023biological_processDNA endoreduplication
GO:0045736biological_processnegative regulation of cyclin dependent protein kinase activity
GO:0004861molecular_functioncyclin-dependent protein kinase inhibitor activity
GO:0030332molecular_functioncyclin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19953.1.S1_at--739--8531Chr02:32106633..32106657 (25 bp)
TGGACTCCGGTGGTCAGCAGCCGAA
LOC_Os02g52480
Os.19953.1.S1_at--846--2671Chr02:32106662..32106686 (25 bp)
AAGCGAGCGTGCAGATTAAGCGGAA
LOC_Os02g52480
Os.19953.1.S1_at--21--5531Chr02:32106759..32106783 (25 bp)
GAAAAGATGCTCATCCAAAGGGAAT
LOC_Os02g52480
Os.19953.1.S1_at--1136--131Chr02:32106819..32106843 (25 bp)
ATTATAGCCTAACAACCACCGATTC
LOC_Os02g52480
Os.19953.1.S1_at--941--4031Chr02:32106838..32106862 (25 bp)
CGATTCGACTCTTTTTTCTTTCACA
LOC_Os02g52480
Os.19953.1.S1_at--596--9551Chr02:32106866..32106890 (25 bp)
TCTTTGCATTTTTACTCTTACTGTG
LOC_Os02g52480
Os.19953.1.S1_at--540--3151Chr02:32106922..32106946 (25 bp)
AATTCGTCCCAGTATTTATCAGAGG
LOC_Os02g52480
Os.19953.1.S1_at--1058--131Chr02:32106970..32106994 (25 bp)
ATTATCCCCTTACTGTAATTGCCTC
LOC_Os02g52480
Os.19953.1.S1_at--1011--8731Chr02:32106983..32107007 (25 bp)
TGTAATTGCCTCCATCTTGTATTTG
LOC_Os02g52480
Os.19953.1.S1_at--560--5051Chr02:32107038..32107062 (25 bp)
GCAGCTGTTCTGCAAGTTTAAGTTA
LOC_Os02g52480
Os.19953.1.S1_at--1152--5151Chr02:32107049..32107073 (25 bp)
GCAAGTTTAAGTTAACCATCACCGT
LOC_Os02g52480
Target Sequence 
TGGACTCCGGTGGTCAGCAGCCGAAGCTGAAGCGAGCGTGCAGATTAAGCGGAAGCTAGAAAGGAAGGTACAGGGGGGCG
CCGTGTAGAAAGGGAAGGCGAGCTAGAGAGAGGAGAAGAAGAAGAAGAAAAGATGCTCATCCAAAGGGAATAAACTGGAA
AAGTGGGAGACTACAAAAAAAGAAGCATTATAGCCTAACAACCACCGATTCGACTCTTTTTTCTTTCACATTTTCTTTGC
ATTTTTACTCTTACTGTGTACTAGAAAGTAGTAGCAGTAGTAAACTAGTAATTCGTCCCAGTATTTATCAGAGGTTTATC
TCGATAGGAATAGATATATTATCCCCTTACTGTAATTGCCTCCATCTTGTATTTGGATGGAAATTAAATTTACTGTACAG
CAGCAGCAGCTGTTCTGCAAGTTTAAGTTAACCATCACCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis