Browse Element(s) Details


OsAffx.12610.1.S1_at

Description tigr:9630.m05170
TID=OsAffx.12610.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5244011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52390OsAffx.24834.1.S1_x_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.15022.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390OsAffx.24834.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.39065.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.2.A1_s_at10/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.54818.1.S1_at1/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52400Os.7555.1.S1_at11/112+32063121..32064413expressed protein
LOC_Os02g52410Os.48354.1.S1_at11/112+32065339..32074577expressed protein
LOC_Os02g52410Os.45957.4.S1_x_at5/112+32065339..32074577expressed protein
LOC_Os02g52410Os.24327.1.A1_at1/112+32065339..32074577expressed protein
LOC_Os02g52420Os.17368.1.S1_at10/112+32075424..32079700methionine aminopeptidase, putative, expressed
LOC_Os02g52430Os.27901.1.S1_at11/112+32082237..32084304Regulator of ribonuclease-like protein 1, putative, expressed
LOC_Os02g52440OsAffx.12610.1.S1_at11/112+32085646..32086086hypothetical protein
LOC_Os02g52450Os.15987.1.S1_at11/112+32086877..32088937Regulator of ribonuclease-like protein 3, putative, expressed
LOC_Os02g52460Os.54394.1.S1_at11/112+32089453..32092841Zinc knuckle family protein, expressed
LOC_Os02g52470OsAffx.23623.1.S1_x_at7/112+32093970..32097106VEG136 protein, putative, expressed
LOC_Os02g52470OsAffx.23623.1.S1_at2/112+32093970..32097106VEG136 protein, putative, expressed
LOC_Os02g52480Os.19953.1.S1_at11/112+32105442..32107080Cyclin-dependent kinase inhibitor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12610.1.S1_at--499--351Chr02:32085698..32085732 (25 bp)
ATAATGAGGTTATAGCGACGTGGCA
LOC_Os02g52440
OsAffx.12610.1.S1_at--79--1911Chr02:32085837..32085859 (23 bp)
ACGTGGCAAGCCCATCCATGGCAGT
LOC_Os02g52440
OsAffx.12610.1.S1_at--428--5071Chr02:32085861..32085885 (25 bp)
GCAGCTGCGAGGTGTTTGCAACGAT
LOC_Os02g52440
OsAffx.12610.1.S1_at--640--2731Chr02:32085908..32085932 (25 bp)
AAGCAACGAGTAGTGGTGATGGCAA
LOC_Os02g52440
OsAffx.12610.1.S1_at--349--851Chr02:32085926..32085950 (25 bp)
ATGGCAAGCTCATCAGCAGTGGTGC
LOC_Os02g52440
OsAffx.12610.1.S1_at--28--1531Chr02:32085940..32085964 (25 bp)
AGCAGTGGTGCATTCATGTCTACAA
LOC_Os02g52440
OsAffx.12610.1.S1_at--383--9631Chr02:32085953..32085977 (25 bp)
TCATGTCTACAACCAACTGCAATGG
LOC_Os02g52440
OsAffx.12610.1.S1_at--160--791Chr02:32085974..32085998 (25 bp)
ATGGGACGACATATTTCGGCTCCTC
LOC_Os02g52440
OsAffx.12610.1.S1_at--764--231Chr02:32085984..32086008 (25 bp)
ATATTTCGGCTCCTCATGGCTAGAT
LOC_Os02g52440
OsAffx.12610.1.S1_at--732--3631Chr02:32086014..32086038 (25 bp)
CTTCCTTCGACCTAATCTAGTGACG
LOC_Os02g52440
OsAffx.12610.1.S1_at--1080--1731Chr02:32086023..32086047 (25 bp)
ACCTAATCTAGTGACGGCGTTGACA
LOC_Os02g52440
Target Sequence 
ATAATGAGGTTATAGCGACGTGGCAAGCCCATCCATGGCAGTGGCAGCTGCGAGGTGTTTGCAACGATGGTGGCTTGTCC
ACGGTGGTGGAAGCAACGAGTAGTGGTGATGGCAAGCTCATCAGCAGTGGTGCATTCATGTCTACAACCAACTGCAATGG
GACGACATATTTCGGCTCCTCATGGCTAGATCCGCCCTTCCTTCGACCTAATCTAGTGACGGCGTTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12610.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis