Browse Element(s) Details


Os.27478.1.A1_s_at

Description gb:CB679899
DB_XREF= gi:29683624
DB_XREF=OSJNEf04A04.f
CLONE=OSJNEf04A04
TID=Os.27478.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27478 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_188548.1 (A.thaliana) metalloprotease, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5239011/11Peptidase M16 inactive domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52340OsAffx.24832.1.S1_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52340Os.4171.1.S1_s_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52350OsAffx.12609.1.S1_at11/112+32040339..32041341hypothetical protein
LOC_Os02g52360Os.53007.1.S1_at11/112+32041897..32046431peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g52370Os.53665.1.S1_at11/112+32046713..32050017armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os02g52380OsAffx.24833.1.S1_at11/112+32053128..32054420hypothetical protein
LOC_Os02g52390OsAffx.24834.1.S1_x_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.15022.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390OsAffx.24834.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.39065.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.2.A1_s_at10/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.54818.1.S1_at1/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52400Os.7555.1.S1_at11/112+32063121..32064413expressed protein
LOC_Os02g52410Os.48354.1.S1_at11/112+32065339..32074577expressed protein
LOC_Os02g52410Os.45957.4.S1_x_at5/112+32065339..32074577expressed protein
LOC_Os02g52410Os.24327.1.A1_at1/112+32065339..32074577expressed protein
LOC_Os02g52420Os.17368.1.S1_at10/112+32075424..32079700methionine aminopeptidase, putative, expressed
LOC_Os02g52430Os.27901.1.S1_at11/112+32082237..32084304Regulator of ribonuclease-like protein 1, putative, expressed
LOC_Os02g52440OsAffx.12610.1.S1_at11/112+32085646..32086086hypothetical protein
LOC_Os02g52450Os.15987.1.S1_at11/112+32086877..32088937Regulator of ribonuclease-like protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0051605biological_processproteolysis during protein maturation
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27478.1.A1_s_at--1068--5651Chr02:32060770..32060794 (25 bp)
GACATGGACTTCGTGCAGCTTAACC
LOC_Os02g52390
Os.27478.1.A1_s_at--929--9951Chr02:32060830..32060854 (25 bp)
TACCCATTCACATCGTCGATAAGGG
LOC_Os02g52390
Os.27478.1.A1_s_at--400--8151Chr02:32060854..32060878 (25 bp)
GGAAAAGATGATCCTCTTACTCGGA
LOC_Os02g52390
Os.27478.1.A1_s_at--1084--9251Chr02:32060865..32060889 (25 bp)
TCCTCTTACTCGGATCGTTGTTAGG
LOC_Os02g52390
Os.27478.1.A1_s_at--845--8191Chr02:32060891..32060915 (25 bp)
GGAAGTCTATGGCAACACGAGTAGA
LOC_Os02g52390
Os.27478.1.A1_s_at--102--4951Chr02:32061123..32061147 (25 bp)
GCATTCTCCAAGATGTTCAGTTCAC
LOC_Os02g52390
Os.27478.1.A1_s_at--132--3451Chr02:32061140..32061164 (25 bp)
CAGTTCACAGAGCAGCAGAGGTTCA
LOC_Os02g52390
Os.27478.1.A1_s_at--885--1011Chr02:32061158..32061182 (25 bp)
AGGTTCAAGCAGTTTGTTTCTCAAA
LOC_Os02g52390
Os.27478.1.A1_s_at--948--5571Chr02:32061860..32061884 (25 bp)
GAAAGGACGGTTGCCTGGTCAACAT
LOC_Os02g52390
Os.27478.1.A1_s_at--605--10771Chr02:32061938..32061962 (25 bp)
TTGATTCGCTGCCAAGTACTACATC
LOC_Os02g52390
Os.27478.1.A1_s_at--659--7011Chr02:32061953..32061977 (25 bp)
GTACTACATCCCTTGGAAGTGATCC
LOC_Os02g52390
Target Sequence 
GACATGGACTTCGTGCAGCTTAACCAATTAATTGGAAGAAAAACTGGANGCATATCAGTNTACCCATTCACATCGTCGAT
AAGGGGAAAAGATGATCCTCTTACTCGGATCGTTGTTAGGGGGAAGTCTATGGCAACACGAGTAGAAGATNTGTTTAATC
TGATTNACTGCATTCTCCAAGATGTTCAGTTCACAGAGCAGCAGAGGTTCAAGCAGTTTGTTTCTCAAAGTAAAGCAAGA
ATGGAGAATCGATTGAGGGGCAGTGGCCATGGCATAGCTGCTGCTAGAATGGATGCTAAGTTAAATGCANCTGGATGGAT
TGCTGAGCANATGGGTGGTATTAGTTATCTTGAGTATTTACGTGATCTGGAAACGAAGATCNATCANGATTGGGACNANA
TATCATCTTCGCTTNAGGANATGANACAATCTCTCTTTAGAAAGGACGGTTGCCTGGTCAACATAACAAGTGACTGGAAA
AATCTTGAGAAATCTAACAAACATATTGCCAAATTTCTTGATTCGCTGCCAAGTACTACATCCCTTGGAAGTGATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27478.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis