Browse Element(s) Details


Os.53665.1.S1_at

Description gb:AK073828.1
DB_XREF= gi:32983851
TID=Os.53665.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068P04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068P04, full insert sequence.
FL= gb:AK073828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5237011/11armadillo/beta-catenin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52330OsAffx.3045.1.S1_at11/112+32023652..32027083hypothetical protein
LOC_Os02g52330Os.7307.3.S1_x_at3/112+32023652..32027083hypothetical protein
LOC_Os02g52340OsAffx.24832.1.S1_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52340Os.4171.1.S1_s_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52350OsAffx.12609.1.S1_at11/112+32040339..32041341hypothetical protein
LOC_Os02g52360Os.53007.1.S1_at11/112+32041897..32046431peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g52370Os.53665.1.S1_at11/112+32046713..32050017armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os02g52380OsAffx.24833.1.S1_at11/112+32053128..32054420hypothetical protein
LOC_Os02g52390OsAffx.24834.1.S1_x_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.15022.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390OsAffx.24834.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.39065.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.2.A1_s_at10/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.54818.1.S1_at1/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52400Os.7555.1.S1_at11/112+32063121..32064413expressed protein
LOC_Os02g52410Os.48354.1.S1_at11/112+32065339..32074577expressed protein
LOC_Os02g52410Os.45957.4.S1_x_at5/112+32065339..32074577expressed protein
LOC_Os02g52410Os.24327.1.A1_at1/112+32065339..32074577expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53665.1.S1_at--393--6051Chr02:32047433..32047457 (25 bp)
GAGATTTTCTGAAGACCCACCAATA
LOC_Os02g52370
Os.53665.1.S1_at--888--811Chr02:32047311..32047335 (25 bp)
ATGGTGACTATCCTTACACTGCGGT
LOC_Os02g52370
Os.53665.1.S1_at--629--851Chr02:32047250..32047274 (25 bp)
ATGGCACTTTGGCTATACAGGCAAT
LOC_Os02g52370
Os.53665.1.S1_at--1050--5171Chr02:32047230..32047254 (25 bp)
GCAATGCAAAAGTTCCCTTCTTCTG
LOC_Os02g52370
Os.53665.1.S1_at--604--2731Chr02:32047194..32047218 (25 bp)
AAGCAAGCCTGCCTTATGATCCGTA
LOC_Os02g52370
Os.53665.1.S1_at--456--691Chr02:32047179..32047203 (25 bp)
ATGATCCGTAATCTTGTCGTCAGAA
LOC_Os02g52370
Os.53665.1.S1_at--89--7651Chr02:32046959..32046983 (25 bp)
GGGAGCTGCAAAGATGCTGCCACAT
LOC_Os02g52370
Os.53665.1.S1_at--908--9191Chr02:32046942..32046966 (25 bp)
TGCCACATCTGCCTTGAGGGATCTG
LOC_Os02g52370
Os.53665.1.S1_at--411--6411Chr02:32046923..32046947 (25 bp)
GATCTGGGCGTGGACAACTACAATG
LOC_Os02g52370
Os.53665.1.S1_at--232--171Chr02:32046810..32046834 (25 bp)
ATTTTGGCTATGCTTGTGCGTGGTC
LOC_Os02g52370
Os.53665.1.S1_at--16--7311Chr02:32046795..32046819 (25 bp)
GTGCGTGGTCTCAATTTTGTGGAAT
LOC_Os02g52370
Target Sequence 
GAGATTTTCTGAAGACCCACCAATAATACAAGAGGTAATGTCTATGGTGACTATCCTTACACTGCGGTCACCAGAAAATG
CAGCTCGTGCAATGGGAGCAGGGTATGGCACTTTGGCTATACAGGCAATGCAAAAGTTCCCTTCTTCTGCTCAAACTCAG
AAGCAAGCCTGCCTTATGATCCGTAATCTTGTCGTCAGAAACCCTGAAAACCGGACGATCTTGCTTAATGATGGTGTGGA
GAAGCTTATTAGGAAAACCAAGATGATGCACGGGAGCTGCAAAGATGCTGCCACATCTGCCTTGAGGGATCTGGGCGTGG
ACAACTACAATGCATAGACAGGGAAATGAATTTACTGTGCGTAAATTTTGGCAATCTGAGGATGTTTTGGGGGAATTAAT
GGTGTGTTTGGGTTGATAGGATTTTGGCTATGCTTGTGCGTGGTCTCAATTTTGTGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis