Browse Element(s) Details


Os.53007.1.S1_at

Description gb:AK070404.1
DB_XREF= gi:32980428
TID=Os.53007.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054M07, full insert sequence.
FL= gb:AK070404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5236011/11peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52300Os.26718.1.S1_at11/112+32015703..32017260expressed protein
LOC_Os02g52314Os.51499.1.S1_at11/112+32017453..32021281ER6 protein, putative, expressed
LOC_Os02g52330OsAffx.3045.1.S1_at11/112+32023652..32027083hypothetical protein
LOC_Os02g52330Os.7307.3.S1_x_at3/112+32023652..32027083hypothetical protein
LOC_Os02g52340OsAffx.24832.1.S1_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52340Os.4171.1.S1_s_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52350OsAffx.12609.1.S1_at11/112+32040339..32041341hypothetical protein
LOC_Os02g52360Os.53007.1.S1_at11/112+32041897..32046431peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g52370Os.53665.1.S1_at11/112+32046713..32050017armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os02g52380OsAffx.24833.1.S1_at11/112+32053128..32054420hypothetical protein
LOC_Os02g52390OsAffx.24834.1.S1_x_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.15022.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390OsAffx.24834.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.39065.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.2.A1_s_at10/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.54818.1.S1_at1/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52400Os.7555.1.S1_at11/112+32063121..32064413expressed protein
LOC_Os02g52410Os.48354.1.S1_at11/112+32065339..32074577expressed protein
LOC_Os02g52410Os.45957.4.S1_x_at5/112+32065339..32074577expressed protein
LOC_Os02g52410Os.24327.1.A1_at1/112+32065339..32074577expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0007165biological_processsignal transduction
GO:0010050biological_processvegetative phase change
GO:0005829cellular_componentcytosol
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53007.1.S1_at--80--1551Chr02:32045220..32045242 (23 bp)
AGCTTTTTTCCGTCAAGGACAGGCA
LOC_Os02g52360
Os.53007.1.S1_at--92--7091Chr02:32045231..32045537 (25 bp)
GTCAAGGACAGGCACGCATCGCACT
LOC_Os02g52360
Os.53007.1.S1_at--672--8251Chr02:32045523..32045547 (25 bp)
GGCACGCATCGCACTCAATGATATT
LOC_Os02g52360
Os.53007.1.S1_at--509--4811Chr02:32045575..32045599 (25 bp)
GCTCTGCAGTTGGAGCCAAACGATG
LOC_Os02g52360
Os.53007.1.S1_at--833--8071Chr02:32045689..32045713 (25 bp)
GGAGCTGGCTGCTGCAAAAAAGAAG
LOC_Os02g52360
Os.53007.1.S1_at--960--7971Chr02:32045840..32045864 (25 bp)
GGATGTTCCAACCATCAGGAGGTTC
LOC_Os02g52360
Os.53007.1.S1_at--6--351Chr02:32045995..32046019 (25 bp)
ATAACTGATCGGCTTAAGTTCAACG
LOC_Os02g52360
Os.53007.1.S1_at--748--10351Chr02:32046020..32046044 (25 bp)
TTTTGTAGTTCTCTTCATGACACAT
LOC_Os02g52360
Os.53007.1.S1_at--160--6731Chr02:32046027..32046051 (25 bp)
GTTCTCTTCATGACACATACTGGTG
LOC_Os02g52360
Os.53007.1.S1_at--1071--2071Chr02:32046041..32046065 (25 bp)
ACATACTGGTGCTGCCTGGTGAAAA
LOC_Os02g52360
Os.53007.1.S1_at--234--9071Chr02:32046252..32046276 (25 bp)
TGCATAACAGAAACAACTCCCATGG
LOC_Os02g52360
Target Sequence 
AGCTTTTTTCCGTCAAGGACAGGCACGCATCGCACTCAATGATATTGATGCTGCAGTTGAGAGCTTCAAGCATGCTCTGC
AGTTGGAGCCAAACGATGGAGGAATTAAGCGGGAGCTGGCTGCTGCAAAAAAGAAGATTGCTGACAGACGGGATCAGGAG
CGGAAAGCATTTTCTNAGGATGTTCCAACCATCAGGAGGTTCAGAGAAGATCGATGAAGAGAATAACTGATCGGCTTAAG
TTCAACGNTTTTGTAGTTCTCTTCATGACACATACTGGTGCTGCCTGGTGAAAAAATAGAGTTCAGGTGATGGATGANAN
ANGTTTTTGCATAACAGAAGGTGATGGATGAGAGAGTTATGCAGTTTNTGCATAACAGAAGGTGATGGATGAGAGAGTTT
TTGCATAACAGAAACAACTCCCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis